Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.8e-235 818.9 420 100.0
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 4.5e-223 777.7 420 93.8
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 8.0e-196 687.2 409 86.8
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 9.2e-184 647.1 422 79.4
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 4.9e-169 598.2 421 74.1
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.6e-164 582.0 420 71.7
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.4e-163 580.1 426 71.1
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 8.9e-163 577.4 426 70.7
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.2e-162 577.0 431 70.8
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.6e-162 575.9 436 69.0
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 5.8e-162 574.7 421 74.1
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.3e-161 573.5 415 72.8
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 2.9e-161 572.4 438 67.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 8.3e-161 570.9 415 72.3
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.1e-160 570.5 433 68.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.2e-160 568.9 442 68.6
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.5e-159 565.5 392 74.2
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.0e-158 563.9 435 68.5
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 5.1e-158 561.6 421 71.3
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 6.6e-158 561.2 428 69.2
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 8.6e-158 560.8 439 67.7
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 8.6e-158 560.8 437 68.2
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.5e-157 560.1 435 68.7
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 9.5e-157 557.4 428 69.6
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 2.1e-156 556.2 434 68.0
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 4.7e-156 555.1 445 67.2
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.1e-155 553.9 434 66.6
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.4e-155 553.5 427 69.3
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 3.8e-153 545.4 429 68.8
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.9e-153 545.0 415 70.4
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 6.4e-153 544.7 435 67.4
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 3.2e-152 542.3 437 67.3
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 7.1e-152 541.2 421 70.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 7.8e-151 537.7 428 66.4
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.6e-149 531.6 428 65.4
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 4.7e-148 528.5 393 67.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 8.1e-148 527.7 476 61.3
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.5e-146 523.5 428 65.0
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.5e-146 523.5 441 64.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 4.4e-146 521.9 421 66.0
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 7.6e-146 521.2 411 66.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.7e-145 520.0 436 62.8
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 6.4e-145 518.1 432 64.4
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.1e-143 513.1 429 63.4
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.7e-142 510.0 407 66.1
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 5.1e-142 508.4 406 65.0
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 8.7e-142 507.7 385 68.3
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 8.7e-142 507.7 424 64.2
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.1e-141 507.3 398 67.1
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.5e-141 506.9 404 64.9
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.9e-141 506.5 395 66.3
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.6e-141 505.0 424 63.9
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 7.3e-141 504.6 317 78.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.3e-140 503.8 385 66.5
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.6e-140 503.4 328 75.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.6e-140 502.3 385 67.3
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.8e-139 500.0 402 64.9
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.8e-139 500.0 317 78.2
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.4e-139 499.6 427 62.8
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 5.3e-139 498.4 387 67.2
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.3e-139 498.4 388 65.2
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 9.0e-139 497.7 388 66.8
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 9.0e-139 497.7 388 66.8
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 5.8e-138 495.0 448 59.8
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 5.8e-138 495.0 391 65.5
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 7.6e-138 494.6 385 67.0
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.7e-137 493.4 394 64.5
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.7e-137 493.4 427 61.8
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 6.4e-137 491.5 387 65.9
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 6.4e-137 491.5 427 61.6
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 1.1e-136 490.7 404 63.9
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.4e-136 489.6 386 66.6
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.3e-134 483.0 430 60.9
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 3.0e-134 482.6 452 59.1
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.1e-133 480.7 395 63.8
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 5.6e-133 478.4 317 74.1
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 9.6e-133 477.6 343 69.7
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 8.1e-132 474.6 406 60.1
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 3.1e-131 472.6 392 62.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 9.0e-131 471.1 434 59.2
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.0e-130 469.9 397 61.2
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.6e-130 469.5 373 65.7
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.5e-130 468.8 413 61.5
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 4.5e-130 468.8 403 62.0
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 4.9e-129 465.3 379 64.6
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.1e-128 464.2 402 58.5
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.9e-128 463.4 445 58.0
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 3.5e-127 459.1 397 61.7
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.0e-126 457.6 402 60.2
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.3e-126 457.2 391 61.4
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.8e-126 456.8 411 57.7
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 3.9e-126 455.7 412 60.2
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 8.7e-126 454.5 417 58.5
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.5e-125 453.8 402 60.4
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.3e-125 452.2 436 57.3
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 3.7e-124 449.1 420 57.9
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.7e-124 449.1 421 58.2
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.1e-123 446.0 403 59.8
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.0e-123 444.5 421 58.0
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.0e-122 443.4 418 59.1
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.6e-122 443.0 424 57.1
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 7.6e-122 441.4 419 57.8
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 8.4e-121 438.0 385 60.8
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-120 437.6 414 58.5
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 7.1e-120 434.9 357 63.9
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 2.1e-119 433.3 414 58.2
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 2.1e-119 433.3 417 57.8
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.1e-119 433.3 317 70.7
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 6.0e-119 431.8 418 57.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.7e-116 422.5 409 57.9
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.4e-115 420.6 514 47.3
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.8e-115 420.2 407 56.0
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.1e-115 419.1 398 57.8
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.6e-114 416.4 408 57.4
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.4e-114 416.0 403 57.8
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 4.5e-114 415.6 396 55.6
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.2e-113 413.3 326 67.8
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 7.2e-112 408.3 320 59.1
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.3e-112 407.9 382 57.1
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.2e-111 407.5 407 56.0
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 4.6e-111 405.6 407 55.8
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 6.1e-111 405.2 407 55.8
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.3e-110 404.1 391 51.7
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-110 403.7 407 55.5
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 5.7e-109 398.7 407 55.3
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.2e-108 396.7 388 54.1
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.8e-108 395.6 412 54.6
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.8e-108 395.6 412 54.6
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 6.3e-108 395.2 391 56.0
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 3.1e-107 392.9 413 54.2
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 3.1e-107 392.9 413 54.2
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 5.9e-106 388.7 413 53.8
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.9e-105 386.3 396 54.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.9e-105 386.3 317 64.7
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.4e-104 384.0 387 56.8
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 7.2e-104 381.7 337 56.1
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.2e-92 343.6 407 47.2
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.7e-87 326.6 188 83.0
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.0e-86 324.7 281 60.5
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 3.9e-57 226.5 330 38.2
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.6e-53 213.8 317 40.4
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-50 204.9 196 55.6
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-48 198.4 190 55.3
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.5e-48 197.2 288 43.4
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 4.7e-39 166.4 278 42.1
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 2.5e-32 144.1 189 44.4
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 9.9e-29 132.1 107 69.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.2e-26 125.2 173 45.1
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 5.3e-22 109.8 110 54.5
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 2.0e-21 107.8 102 55.9
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.3e-20 105.1 135 49.6
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 4.6e-18 96.7 237 29.1
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.8e-15 87.4 53 73.6
QL04p046239 Quercus lobata HOM05D004835 ORTHO05D000004 1.4e-06 58.5 55 65.5


User provided reference genes

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