Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.3e-66 255.4 127 100.0
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 2.9e-64 248.4 125 98.4
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.8e-51 205.3 127 79.5
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.1e-50 203.4 127 78.7
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.6e-49 197.2 127 76.4
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.2e-48 195.7 123 78.9
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 8.4e-48 193.7 123 77.2
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.6e-43 179.5 126 73.0
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 2.4e-42 175.6 124 70.2
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.9e-42 174.1 124 71.0
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 2.7e-38 162.2 126 65.9
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 3.5e-38 161.8 126 66.7
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.5e-36 156.4 127 63.0
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.9e-36 156.0 106 67.9
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 2.5e-36 155.6 128 64.1
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.3e-36 155.2 113 68.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.3e-36 154.8 124 62.9
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 4.3e-36 154.8 106 68.9
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 2.1e-35 152.5 110 67.3
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.7e-35 151.8 128 61.7
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.1e-34 150.2 128 64.1
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.4e-34 149.1 128 61.7
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 5.3e-34 147.9 108 67.6
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.6e-33 145.6 109 67.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 5.8e-33 144.4 109 66.1
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 9.9e-33 143.7 112 67.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.2e-32 142.5 110 60.0
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.2e-32 142.5 110 60.0
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 4.9e-32 141.4 129 55.0
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 8.4e-32 140.6 110 59.1
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.1e-31 140.2 109 63.3
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-31 140.2 127 55.1
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 9.3e-31 137.1 115 60.9
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 3.0e-29 132.1 129 51.9
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 8.7e-29 130.6 110 64.5
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.5e-28 129.0 107 60.7
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 3.3e-28 128.6 123 50.4
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 7.4e-28 127.5 114 57.0
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.4e-28 127.5 111 57.7
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 9.6e-28 127.1 110 60.9
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-27 126.7 110 60.9
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-27 126.7 107 59.8
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.6e-27 126.3 126 54.0
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 1.6e-27 126.3 123 49.6
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 2.8e-27 125.6 117 61.5
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.8e-27 125.6 110 56.4
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 4.8e-27 124.8 123 56.1
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 6.2e-27 124.4 114 58.8
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 8.2e-27 124.0 107 58.9
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 8.2e-27 124.0 108 58.3
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.1e-26 123.6 125 52.8
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.1e-26 123.6 114 53.5
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.8e-26 122.9 113 58.4
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 3.1e-26 122.1 109 62.4
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 6.9e-26 120.9 109 54.1
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.6e-25 119.0 107 55.1
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.6e-25 119.0 108 56.5
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.5e-25 118.2 104 58.7
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.5e-25 118.2 104 58.7
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.9e-24 115.5 128 54.7
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 6.5e-24 114.4 110 52.7
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 2.5e-23 112.5 119 51.3
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 5.5e-23 111.3 122 45.9
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 5.5e-23 111.3 110 49.1
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 5.5e-23 111.3 109 61.5
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.1e-22 109.4 112 53.6
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 2.1e-22 109.4 109 49.5
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.0e-22 107.8 124 45.2
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 3.9e-21 105.1 109 54.1
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 8.7e-21 104.0 109 49.5
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 8.7e-21 104.0 115 53.0
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 4.3e-20 101.7 115 52.2
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 5.7e-20 101.3 109 48.6
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 7.4e-20 100.9 122 50.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.3e-19 100.1 120 48.3
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 6.3e-19 97.8 108 49.1
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.4e-18 96.7 122 45.9
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 3.1e-18 95.5 122 45.1
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 4.1e-18 95.1 121 47.9
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.2e-17 93.6 107 50.5
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 4.5e-17 91.7 112 47.3
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 5.9e-17 91.3 108 44.4
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.0e-16 90.5 113 45.1
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.3e-16 90.1 108 46.3
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-16 90.1 120 46.7
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.7e-16 89.7 108 48.1
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.2e-16 89.4 124 41.9
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.2e-16 89.4 109 47.7
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.2e-16 89.4 121 44.6
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 6.5e-16 87.8 110 45.5
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 8.5e-16 87.4 110 48.2
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.5e-15 85.9 109 43.1
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 4.2e-15 85.1 121 36.4
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 7.2e-15 84.3 132 42.4
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 9.4e-15 84.0 122 40.2
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.6e-14 83.2 107 43.0
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.6e-14 83.2 127 42.5
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 1.6e-14 83.2 101 43.6
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.1e-14 82.8 127 42.5
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.1e-14 82.8 124 38.7
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 3.6e-14 82.0 113 44.2
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 3.6e-14 82.0 122 41.0
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 6.1e-14 81.3 94 54.3
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 6.1e-14 81.3 124 39.5
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 6.1e-14 81.3 125 39.2
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 6.1e-14 81.3 126 39.7
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 7.9e-14 80.9 109 43.1
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.0e-13 80.5 124 37.9
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.4e-13 80.1 134 37.3
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.8e-13 79.7 127 38.6
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.0e-13 79.0 107 45.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 6.7e-13 77.8 103 44.7
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 8.8e-13 77.4 116 38.8
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.5e-12 76.6 115 35.7
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.9e-12 76.3 111 40.5
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.9e-12 76.3 111 40.5
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.9e-12 76.3 111 40.5
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 2.5e-12 75.9 113 40.7
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 2.5e-12 75.9 112 42.9
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.3e-12 75.5 108 45.4
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 5.7e-12 74.7 110 39.1
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 7.4e-12 74.3 125 37.6
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 1.7e-11 73.2 122 34.4
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 2.2e-11 72.8 125 36.8
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 2.2e-11 72.8 108 39.8
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 4.8e-11 71.6 115 40.0
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 6.3e-11 71.2 103 41.7
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 6.3e-11 71.2 107 39.3
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 8.2e-11 70.9 112 37.5
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.2e-11 70.9 116 36.2
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 1.8e-10 69.7 98 44.9
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.4e-10 69.3 103 38.8
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 5.3e-10 68.2 105 38.1
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 9.1e-10 67.4 104 38.5
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 9.1e-10 67.4 107 41.1
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 1.2e-09 67.0 88 46.6
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 2.6e-09 65.9 132 34.8
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.6e-09 65.9 110 40.9
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.6e-09 65.9 110 40.9
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 7.7e-09 64.3 122 33.6
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 7.7e-09 64.3 103 35.9
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 1.3e-08 63.5 104 36.5
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 1.7e-08 63.2 122 34.4
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.8e-08 62.0 93 46.2
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.8e-08 62.0 110 39.1
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 3.8e-08 62.0 132 35.6
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.4e-07 60.1 109 36.7
Zm00001eb219890 Zea mays HOM05D004992 ORTHO05D006004 9.4e-07 57.4 116 35.3


User provided reference genes

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