Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 2657.5 1423 100.0
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 2395.5 1458 89.7
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1931.0 1531 70.0
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1629.4 1424 64.3
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1614.0 1569 57.6
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1528.1 1562 57.4
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1525.4 1426 60.8
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1499.6 1482 57.6
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1495.3 1433 58.5
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1489.9 1433 59.7
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1488.4 1527 55.8
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1475.7 1496 57.2
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1474.1 1411 57.2
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1469.9 1517 54.8
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1463.7 1545 57.1
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1446.0 1496 55.2
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1444.9 1555 53.6
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1442.9 1411 59.0
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1432.2 1502 54.6
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1423.7 1501 54.2
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1416.4 1561 53.9
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1416.4 1470 55.8
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1416.4 1420 60.4
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1404.8 1421 57.1
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1402.9 1466 54.7
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1392.9 1540 52.8
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1380.2 1424 55.1
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1376.3 1432 56.4
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1368.2 1557 52.0
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1367.1 1433 54.2
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1365.1 1413 55.6
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1360.5 1424 54.4
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1356.3 1540 50.6
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1349.0 1408 53.9
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1345.1 1452 54.5
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1344.3 1421 53.7
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1343.9 1422 53.7
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1343.9 1439 54.3
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1335.9 1596 49.7
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1327.4 1439 53.9
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1322.4 1487 51.5
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1306.2 1562 50.3
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1305.4 1790 46.2
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1291.9 1420 52.3
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1285.0 1413 52.0
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1283.1 1411 51.7
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1279.2 1438 52.2
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1261.1 1476 49.9
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1251.9 1434 52.4
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1248.4 1435 52.0
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 0.0e+00 1247.6 769 83.7
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1238.8 1418 52.7
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1238.0 1529 50.2
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1236.9 1435 50.5
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1234.9 1428 52.4
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1216.4 1536 47.9
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1205.3 1456 49.9
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1204.1 1520 48.2
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1196.4 1520 48.4
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 0.0e+00 1194.9 1473 49.5
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1186.0 1431 49.5
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1181.0 1428 48.6
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 0.0e+00 1178.3 1459 49.8
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1171.8 1436 48.7
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1168.7 1430 48.3
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 0.0e+00 1161.0 1514 48.3
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1160.2 1414 48.4
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1155.6 1458 47.5
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1155.6 1413 49.0
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1149.0 1477 49.1
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 0.0e+00 1148.7 1038 61.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1146.3 1440 47.5
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1137.9 1429 47.5
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1137.5 1459 47.2
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1134.0 1495 48.4
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1116.3 1486 46.2
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 0.0e+00 1092.4 1425 48.6
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 0.0e+00 1089.3 1429 46.3
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 0.0e+00 1088.6 1421 48.1
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1086.6 1433 46.6
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1077.4 1025 58.2
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 2.5e-310 1069.3 1419 47.6
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 6.9e-308 1061.2 1483 44.9
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 3.5e-304 1048.9 1330 49.2
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 8.7e-303 1044.3 1379 48.1
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.3e-287 993.0 1272 47.0
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 4.3e-286 988.8 2361 34.8
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.7e-285 986.9 1423 44.0
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 3.7e-285 985.7 953 56.0
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 6.7e-279 964.9 1487 44.7
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.2e-272 944.1 1364 46.1
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.1e-244 851.3 1411 40.0
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 3.3e-233 813.1 1215 42.3
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.5e-230 804.3 1407 38.2
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.2e-222 778.1 780 54.5
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 1.7e-202 711.1 1505 36.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 3.6e-200 703.4 542 68.3
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.2e-196 689.9 1187 39.9
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 5.5e-196 689.5 1398 36.5
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 5.3e-183 646.4 861 44.7
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.2e-174 618.6 703 49.2
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.1e-167 594.0 873 42.5
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.7e-165 588.2 1365 35.2
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 1.1e-161 575.5 434 69.8
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 9.1e-159 565.8 489 64.8
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 5.0e-141 506.9 661 50.2
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.7e-133 481.9 555 50.5
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.2e-129 469.2 494 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.9e-116 425.2 1482 28.5
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.3e-104 386.0 500 43.4
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.4e-103 382.5 527 43.5
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 4.1e-103 380.9 1535 27.8
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 5.4e-95 354.0 363 56.7
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 4.3e-92 344.4 1470 25.1
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 4.2e-87 327.8 388 47.9
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.3e-84 318.2 290 54.1
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 1.2e-73 283.1 436 49.5
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.2e-71 274.6 274 58.0
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 7.7e-57 227.3 155 74.8
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-55 223.4 835 27.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.5e-49 203.0 301 41.5
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.1e-46 192.6 504 30.4
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.9e-45 188.3 150 66.7
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.3e-43 183.3 232 43.1
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-42 180.3 683 26.6
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 9.1e-42 177.2 127 70.9
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 2.7e-38 165.6 150 62.7
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.6e-36 159.1 432 38.7
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 5.9e-33 147.9 412 28.6
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 9.8e-28 130.6 739 23.8
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 3.5e-25 122.1 96 60.4
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.0e-24 118.2 99 62.6
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 5.0e-24 118.2 100 62.0
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.1e-23 117.1 364 28.3
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 5.5e-23 114.8 178 40.4
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 6.3e-19 101.3 75 62.7
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 3.5e-17 95.5 147 43.5
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 1.9e-15 89.7 244 29.1
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.0e-13 82.0 89 57.3
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 4.0e-13 82.0 170 50.0
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 6.4e-11 74.7 69 55.1
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.4e-10 73.6 567 22.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 9.2e-10 70.9 56 60.7
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.6e-09 70.1 53 64.2
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 6.2e-06 58.2 163 30.7


User provided reference genes

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