Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.2e-53 213.0 111 100.0
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.4e-46 188.7 114 91.2
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 6.2e-39 164.1 111 82.0
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 3.8e-36 154.8 111 78.4
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.2e-35 151.8 108 72.2
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 2.6e-29 132.1 110 65.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 2.6e-29 132.1 110 65.5
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 2.9e-28 128.6 110 64.5
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.9e-28 127.9 105 63.8
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 6.4e-28 127.5 107 65.4
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 7.1e-27 124.0 111 57.7
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 7.1e-27 124.0 107 64.5
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-26 123.2 106 64.2
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.7e-26 122.1 107 66.4
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.5e-26 121.7 106 63.2
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.0e-25 120.2 114 57.0
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.0e-25 120.2 107 65.4
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.9e-25 118.2 110 62.7
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.9e-25 118.2 107 60.7
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 5.1e-25 117.9 106 58.5
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.7e-25 117.5 107 61.7
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.7e-25 117.1 110 61.8
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 8.7e-25 117.1 114 57.9
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.9e-24 115.9 109 56.9
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.3e-24 115.2 105 57.1
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.4e-24 114.0 110 60.9
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.3e-23 113.2 106 55.7
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.6e-23 112.8 103 57.3
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.1e-23 112.5 100 63.0
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.1e-23 112.5 100 63.0
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.1e-23 112.5 106 61.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 6.2e-23 110.9 103 56.3
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.1e-22 110.2 108 55.6
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.8e-22 109.4 107 59.8
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 3.1e-22 108.6 97 61.9
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 5.3e-22 107.8 103 52.4
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 9.0e-22 107.1 109 52.3
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-21 106.7 99 55.6
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.2e-21 106.7 114 54.4
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.2e-21 106.7 107 59.8
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.5e-21 104.8 99 54.5
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.5e-21 104.8 99 54.5
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.7e-20 102.8 107 55.1
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 6.5e-20 100.9 100 56.0
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.5e-20 100.9 103 56.3
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.1e-19 100.1 100 59.0
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.4e-19 99.8 113 46.9
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.9e-19 99.4 102 55.9
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 4.2e-19 98.2 118 50.8
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 5.5e-19 97.8 114 44.7
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 5.5e-19 97.8 114 44.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 9.3e-19 97.1 111 48.6
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.6e-18 96.3 101 50.5
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.6e-18 96.3 103 53.4
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.1e-18 95.9 101 51.5
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.1e-18 95.9 100 58.0
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.1e-18 95.9 100 57.0
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.1e-18 95.9 109 49.5
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.7e-18 95.5 97 53.6
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.0e-18 94.4 112 48.2
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.3e-17 92.4 73 63.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.0e-17 92.0 111 48.6
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 3.0e-17 92.0 109 52.3
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.9e-17 91.7 101 51.5
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.9e-17 91.7 114 44.7
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 8.7e-17 90.5 101 48.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 8.7e-17 90.5 107 49.5
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 8.7e-17 90.5 98 48.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-16 89.7 101 50.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.3e-16 88.2 95 51.6
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.3e-16 88.2 98 49.0
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.3e-16 88.2 116 45.7
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.7e-16 87.0 97 51.5
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 2.2e-15 85.9 113 43.4
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.2e-15 85.9 101 47.5
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 2.2e-15 85.9 110 47.3
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.2e-15 85.9 86 50.0
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.8e-15 85.5 95 50.5
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 2.8e-15 85.5 112 46.4
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.7e-15 85.1 97 51.5
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.7e-15 85.1 89 51.7
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 4.8e-15 84.7 86 53.5
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 6.3e-15 84.3 97 46.4
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.1e-14 83.6 103 45.6
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-14 83.2 97 50.5
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.4e-14 83.2 88 47.7
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.8e-14 82.8 91 49.5
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 4.1e-14 81.6 103 45.6
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 6.9e-14 80.9 96 44.8
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 9.0e-14 80.5 92 46.7
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 9.0e-14 80.5 114 40.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.6e-13 79.0 80 52.5
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.6e-13 79.0 80 52.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.3e-12 76.6 108 41.7
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.3e-12 76.6 95 44.2
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.7e-12 76.3 80 51.2
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.2e-12 75.9 104 44.2
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 2.5e-11 72.4 103 39.8
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 7.2e-11 70.9 69 60.9
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 7.2e-11 70.9 69 60.9
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.2e-10 70.1 65 55.4
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 2.1e-10 69.3 82 50.0
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.1e-10 69.3 91 41.8
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.7e-10 68.9 103 43.7
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 3.6e-10 68.6 106 38.7
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.0e-09 67.0 95 44.2
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.4e-09 66.6 76 48.7
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.8e-09 66.2 92 45.7
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.3e-09 65.9 95 42.1
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 2.3e-09 65.9 95 44.2
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 2.3e-09 65.9 95 44.2
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 3.0e-09 65.5 92 42.4
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 5.1e-09 64.7 106 41.5
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.1e-09 64.7 96 46.9
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 6.7e-09 64.3 104 41.3
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 6.7e-09 64.3 95 43.2
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 6.7e-09 64.3 95 43.2
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.1e-08 63.5 68 51.5
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.5e-08 63.2 119 36.1
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.5e-08 63.2 104 41.3
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.5e-08 63.2 78 46.2
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.9e-08 62.8 78 47.4
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.9e-08 62.8 95 43.2
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.9e-08 62.8 104 40.4
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.3e-08 61.6 105 39.0
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 4.3e-08 61.6 96 46.9
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 4.3e-08 61.6 95 42.1
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.3e-08 61.6 105 39.0
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 7.4e-08 60.8 112 37.5
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 7.4e-08 60.8 105 41.9
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 9.7e-08 60.5 106 38.7
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.3e-07 60.1 78 46.2
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.3e-07 60.1 71 43.7
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.3e-07 60.1 83 42.2
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 1.7e-07 59.7 118 35.6
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 1.7e-07 59.7 118 35.6
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.7e-07 59.7 119 33.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 2.2e-07 59.3 94 41.5
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.2e-07 59.3 118 34.7
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.2e-07 59.3 118 34.7
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.2e-07 59.3 62 59.7
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 2.8e-07 58.9 63 47.6
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 2.8e-07 58.9 79 41.8
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 2.8e-07 58.9 79 41.8
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 3.7e-07 58.5 65 46.2
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 8.2e-07 57.4 78 42.3
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.1e-06 57.0 100 36.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 1.4e-06 56.6 116 32.8
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 1.4e-06 56.6 78 41.0
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 1.4e-06 56.6 78 41.0
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 1.4e-06 56.6 78 41.0
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-06 56.2 104 37.5
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 3.1e-06 55.5 86 38.4
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 5.3e-06 54.7 104 37.5


User provided reference genes

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