Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000224 Carpinus fangiana HOM05D007941 ORTHO05D010050 0.0e+00 1377.1 707 100.0
Haze_06797 Corylus avellana HOM05D007941 ORTHO05D010050 0.0e+00 1315.1 714 93.3
QL05p073215 Quercus lobata HOM05D007941 ORTHO05D010050 4.3e-303 1044.3 717 76.8
CiPaw.09G091700 Carya illinoinensis HOM05D007941 ORTHO05D010050 2.0e-255 885.9 635 76.4
Prupe.4G021200 Prunus persica HOM05D007941 ORTHO05D010050 1.7e-246 856.3 719 65.6
Thecc.06G220000 Theobroma cacao HOM05D007941 ORTHO05D010050 5.6e-242 841.3 713 64.2
RcHm_v2.0_Chr5g0003191 Rosa chinensis HOM05D007941 ORTHO05D010050 1.3e-230 803.5 712 63.1
Manes.16G007400 Manihot esculenta HOM05D007941 ORTHO05D010050 9.2e-229 797.3 694 62.4
MD05G1345700 Malus domestica HOM05D007941 ORTHO05D010050 9.5e-226 787.3 714 61.1
MD10G1321100 Malus domestica HOM05D007941 ORTHO05D010050 1.6e-225 786.6 717 62.3
Potri.004G015401 Populus trichocarpa HOM05D007941 ORTHO05D010050 2.8e-225 785.8 703 62.3
TWI38G0160 Tripterygium wilfordii HOM05D007941 ORTHO05D010050 6.2e-225 784.6 716 59.2
TAR627G0026 Trochodendron aralioides HOM05D007941 ORTHO05D010050 9.2e-221 770.8 727 60.0
Atru.chr10.2217 Acer truncatum HOM05D007941 ORTHO05D010050 4.6e-220 768.5 727 60.7
Ciclev10017854m.g Citrus clementina HOM05D007941 ORTHO05D010050 2.6e-215 752.7 711 58.9
Sabra04G0007600 Salix brachista HOM05D007941 ORTHO05D010050 2.6e-215 752.7 708 58.5
Nn1g07127 Nelumbo nucifera HOM05D007941 ORTHO05D010050 3.5e-212 742.3 732 58.5
FAN25G1443 Fragaria x ananassa HOM05D007941 ORTHO05D010050 5.6e-210 734.9 717 58.2
COL.COLO4_31770 Corchorus olitorius HOM05D007941 ORTHO05D010050 7.3e-210 734.6 711 58.8
CANSAT56G1781 Cannabis sativa HOM05D007941 ORTHO05D010050 9.9e-207 724.2 731 60.3
FvH4_3g02100 Fragaria vesca HOM05D007941 ORTHO05D010050 6.4e-206 721.5 692 59.2
Gorai.011G014100 Gossypium raimondii HOM05D007941 ORTHO05D010050 8.4e-206 721.1 696 58.2
Gohir.D10G012450 Gossypium hirsutum HOM05D007941 ORTHO05D010050 1.1e-202 710.7 696 58.3
Phvul.003G078500 Phaseolus vulgaris HOM05D007941 ORTHO05D010050 4.5e-199 698.7 707 56.2
Gohir.A10G012680 Gossypium hirsutum HOM05D007941 ORTHO05D010050 3.5e-196 689.1 696 57.6
Glyma.17G013700 Glycine max HOM05D007941 ORTHO05D010050 1.1e-194 684.1 705 55.7
Actinidia26916 Actinidia chinensis HOM05D007941 ORTHO05D010050 9.6e-194 681.0 708 55.5
Cpa.g.sc152.13 Carica papaya HOM05D007941 ORTHO05D010050 2.8e-193 679.5 720 55.3
VMungo1215G2837 Vigna mungo HOM05D007941 ORTHO05D010050 6.9e-192 674.9 707 54.5
Lj4g0020812 Lotus japonicus HOM05D007941 ORTHO05D010050 2.1e-188 663.3 703 55.0
CiPaw.09G091500 Carya illinoinensis HOM05D007941 ORTHO05D010050 1.0e-179 634.4 419 79.7
CsaV3_1G010790 Cucumis sativus L. HOM05D007941 ORTHO05D010050 3.3e-178 629.4 716 51.5
Sed0010816 Sechium edule HOM05D007941 ORTHO05D010050 6.3e-177 625.2 718 51.4
ClCG03G004750 Citrullus lanatus HOM05D007941 ORTHO05D010050 3.1e-176 622.9 716 51.1
Cc09_g01710 Coffea canephora HOM05D007941 ORTHO05D010050 7.2e-173 611.7 719 50.6
PSO832G2769 Papaver somniferum HOM05D007941 ORTHO05D010050 3.3e-170 602.8 741 50.7
Ca_21085_v3 Cicer arietinum L. HOM05D007941 ORTHO05D010050 2.6e-167 593.2 709 51.2
arahy.Tifrunner.gnm1.ann1.CCWF18 Arachis hypogaea HOM05D007941 ORTHO05D010050 1.9e-165 587.0 700 52.4
Lj1C1230T3 Lonicera japonica HOM05D007941 ORTHO05D010050 4.7e-164 582.4 598 55.5
MELO3C002458.2 Cucumis melo HOM05D007941 ORTHO05D010050 8.8e-163 578.2 725 48.7
arahy.Tifrunner.gnm1.ann1.N60BY5 Arachis hypogaea HOM05D007941 ORTHO05D010050 3.7e-161 572.8 699 50.5
TPR.G37125 Trifolium pratense HOM05D007941 ORTHO05D010050 7.0e-160 568.5 811 45.5
GSVIVG01012729001 Vitis vinifera HOM05D007941 ORTHO05D010050 1.9e-157 560.5 422 69.9
Solyc03g031660.1 Solanum lycopersicum HOM05D007941 ORTHO05D010050 4.4e-154 549.3 703 50.1
Sopen03g005520 Solanum pennellii HOM05D007941 ORTHO05D010050 4.8e-153 545.8 702 50.0
Dinv13890 Davidia involucrata HOM05D007941 ORTHO05D010050 2.2e-150 537.0 695 48.6
Nitab4.5_0012670g0020 Nicotiana tabacum HOM05D007941 ORTHO05D010050 1.2e-148 531.2 693 47.0
Peaxi162Scf00502g00214 Petunia axillaris HOM05D007941 ORTHO05D010050 2.9e-142 510.0 705 47.9
PGR004G0641 Punica granatum HOM05D007941 ORTHO05D010050 5.2e-139 499.2 719 45.1
Nn1g03523 Nelumbo nucifera HOM05D007941 ORTHO05D010050 7.8e-135 485.3 376 68.4
Nitab4.5_0007864g0050 Nicotiana tabacum HOM05D007941 ORTHO05D010050 1.8e-131 474.2 687 46.7
FAN21G2241 Fragaria x ananassa HOM05D007941 ORTHO05D010050 2.3e-118 430.6 353 66.3
CDE05G3547 Ceratophyllum demersum HOM05D007941 ORTHO05D010050 6.6e-118 429.1 526 48.5
Medtr4g132080 Medicago truncatula HOM05D007941 ORTHO05D010050 8.6e-118 428.7 478 52.1
AUR62012706 Chenopodium quinoa HOM05D007941 ORTHO05D010050 1.1e-117 428.3 633 44.5
EL10Ac8g20054 Beta vulgaris HOM05D007941 ORTHO05D010050 7.5e-114 415.6 691 44.6
Hma1.2p1_0749F.1_g212520 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 1.4e-107 394.8 207 89.9
Hma1.2p1_0749F.1_g212543 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 1.4e-107 394.8 207 89.9
Mapoly0124s0009 Marchantia polymorpha HOM05D007941 ORTHO05D010050 7.3e-101 372.5 672 42.9
Pp3c25_7620 Physcomitrium patens HOM05D007941 ORTHO05D010050 3.6e-100 370.2 685 40.4
MBI02_g07163_MAGBIO Magnolia biondii HOM05D007941 ORTHO05D010050 1.2e-71 275.4 751 32.8
Dinv20048 Davidia involucrata HOM05D007941 ORTHO05D010050 1.2e-63 248.8 261 56.7
Glyma.07G260250 Glycine max HOM05D007941 ORTHO05D010050 2.9e-57 227.6 362 43.6
Dinv20049 Davidia involucrata HOM05D007941 ORTHO05D010050 3.1e-51 207.6 210 55.7
SEGI_08485 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 3.8e-41 174.1 294 44.6
FAN21G0178 Fragaria x ananassa HOM05D007941 ORTHO05D010050 8.5e-41 172.9 161 61.5
AUR62021948 Chenopodium quinoa HOM05D007941 ORTHO05D010050 1.5e-37 162.2 271 44.3
AUR62021949 Chenopodium quinoa HOM05D007941 ORTHO05D010050 4.1e-35 154.1 326 37.7
SEGI_17062 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 4.0e-30 137.5 70 87.1
ATR0794G083 Amborella trichopoda HOM05D007941 ORTHO05D010050 2.8e-28 131.3 294 35.0
SEGI_18097 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 1.4e-27 129.0 150 50.0
ATR0794G095 Amborella trichopoda HOM05D007941 ORTHO05D010050 2.4e-19 101.7 211 40.3
Nn1g03524 Nelumbo nucifera HOM05D007941 ORTHO05D010050 1.6e-18 99.0 110 59.1
PGSC0003DMG400005076 Solanum tuberosum HOM05D007941 ORTHO05D010050 1.4e-14 85.9 181 37.0
Medtr4g132090 Medicago truncatula HOM05D007941 ORTHO05D010050 1.8e-14 85.5 149 43.0
PSO210G6634 Papaver somniferum HOM05D007941 ORTHO05D010050 9.2e-11 73.2 144 34.0
SEGI_12080 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 1.9e-08 65.5 137 32.1


User provided reference genes

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