Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000168 Carpinus fangiana HOM05D006535 ORTHO05D008548 2.8e-302 1041.2 533 100.0
Haze_06851 Corylus avellana HOM05D006535 ORTHO05D008548 2.0e-292 1008.4 533 97.2
CiPaw.09G097300 Carya illinoinensis HOM05D006535 ORTHO05D008548 1.3e-248 862.8 529 85.4
QL05p072061 Quercus lobata HOM05D006535 ORTHO05D008548 9.7e-247 856.7 533 83.7
Duzib235G1465 Durio zibethinus HOM05D006535 ORTHO05D008548 1.8e-237 825.9 530 80.4
COL.COLO4_37574 Corchorus olitorius HOM05D006535 ORTHO05D008548 1.5e-236 822.8 528 79.7
Thecc.06G227200 Theobroma cacao HOM05D006535 ORTHO05D008548 2.0e-236 822.4 527 80.8
GSVIVG01012659001 Vitis vinifera HOM05D006535 ORTHO05D008548 2.5e-234 815.5 550 77.6
CANSAT56G3727 Cannabis sativa HOM05D006535 ORTHO05D008548 5.5e-234 814.3 533 79.2
RcHm_v2.0_Chr5g0002321 Rosa chinensis HOM05D006535 ORTHO05D008548 2.7e-233 812.0 538 78.1
TWI38G0380 Tripterygium wilfordii HOM05D006535 ORTHO05D008548 8.2e-230 800.4 530 78.9
MD05G1351700 Malus domestica HOM05D006535 ORTHO05D008548 3.1e-229 798.5 543 77.2
FvH4_3g01470 Fragaria vesca HOM05D006535 ORTHO05D008548 4.5e-228 794.7 522 78.5
PGR042G2820 Punica granatum HOM05D006535 ORTHO05D008548 5.9e-228 794.3 541 76.9
Gohir.D10G010800 Gossypium hirsutum HOM05D006535 ORTHO05D008548 2.9e-227 792.0 530 77.2
Gorai.011G011900 Gossypium raimondii HOM05D006535 ORTHO05D008548 5.0e-227 791.2 530 77.0
Glyma.15G111500 Glycine max HOM05D006535 ORTHO05D008548 1.1e-226 790.0 528 78.4
Gohir.A10G011200 Gossypium hirsutum HOM05D006535 ORTHO05D008548 1.9e-226 789.3 530 77.0
TAR626G0131 Trochodendron aralioides HOM05D006535 ORTHO05D008548 1.1e-223 780.0 544 75.2
Hma1.2p1_1358F.1_g277940 Hydrangea macrophylla HOM05D006535 ORTHO05D008548 1.5e-223 779.6 522 78.0
Glyma.09G007100 Glycine max HOM05D006535 ORTHO05D008548 2.6e-223 778.9 534 77.0
Dinv13934 Davidia involucrata HOM05D006535 ORTHO05D008548 5.7e-223 777.7 528 76.5
Eucgr.E03992 Eucalyptus grandis HOM05D006535 ORTHO05D008548 1.8e-221 772.7 541 75.8
Phvul.006G146200 Phaseolus vulgaris HOM05D006535 ORTHO05D008548 1.8e-221 772.7 530 76.8
Psat1g177760 Pisum sativum HOM05D006535 ORTHO05D008548 5.9e-220 767.7 529 76.9
Aqoxy1G03005 Aquilegia oxysepala HOM05D006535 ORTHO05D008548 1.0e-219 766.9 532 75.0
Lalb_Chr18g0056581 Lupinus albus HOM05D006535 ORTHO05D008548 2.2e-219 765.8 534 76.6
Lj6g0003188 Lotus japonicus HOM05D006535 ORTHO05D008548 3.8e-219 765.0 520 78.3
CsaV3_1G046130 Cucumis sativus L. HOM05D006535 ORTHO05D008548 1.9e-218 762.7 539 73.7
MELO3C021729.2 Cucumis melo HOM05D006535 ORTHO05D008548 1.6e-217 759.6 529 74.3
Ciclev10015047m.g Citrus clementina HOM05D006535 ORTHO05D008548 4.7e-217 758.1 493 80.3
ClCG01G009650 Citrullus lanatus HOM05D006535 ORTHO05D008548 1.5e-215 753.1 557 72.2
Sc05g0009420 Simmondsia chinensis HOM05D006535 ORTHO05D008548 6.3e-214 747.7 540 72.0
Potri.004G005500 Populus trichocarpa HOM05D006535 ORTHO05D008548 1.1e-213 746.9 531 75.1
Medtr2g024310 Medicago truncatula HOM05D006535 ORTHO05D008548 2.4e-213 745.7 491 78.8
Sed0002831 Sechium edule HOM05D006535 ORTHO05D008548 2.4e-213 745.7 548 72.1
VMungo0540G1326 Vigna mungo HOM05D006535 ORTHO05D008548 3.1e-213 745.3 506 77.1
Actinidia11871 Actinidia chinensis HOM05D006535 ORTHO05D008548 4.5e-212 741.5 525 74.5
Rhsim02G0105100 Rhododendron simsii HOM05D006535 ORTHO05D008548 7.7e-212 740.7 529 74.1
AUR62012752 Chenopodium quinoa HOM05D006535 ORTHO05D008548 1.3e-211 740.0 543 71.6
Potri.011G010400 Populus trichocarpa HOM05D006535 ORTHO05D008548 3.8e-211 738.4 524 73.9
PSO541G2423 Papaver somniferum HOM05D006535 ORTHO05D008548 6.5e-211 737.6 542 70.3
Ca_00689_v3 Cicer arietinum L. HOM05D006535 ORTHO05D008548 4.7e-209 731.5 502 76.7
Nn1g07251 Nelumbo nucifera HOM05D006535 ORTHO05D008548 3.0e-208 728.8 486 75.9
FAN21G0938 Fragaria x ananassa HOM05D006535 ORTHO05D008548 2.8e-206 722.2 533 72.2
THA.LOC104812977 Tarenaya hassleriana HOM05D006535 ORTHO05D008548 4.8e-206 721.5 543 70.2
Cc09_g01280 Coffea canephora HOM05D006535 ORTHO05D008548 1.4e-205 719.9 526 72.2
MSTRG.14630 Avicennia marina HOM05D006535 ORTHO05D008548 2.0e-204 716.1 522 71.6
HanXRQChr01g0006511 Helianthus annuus HOM05D006535 ORTHO05D008548 5.0e-203 711.4 532 68.2
Hund23439 Selenicereus undatus HOM05D006535 ORTHO05D008548 2.1e-201 706.1 541 68.8
arahy.Tifrunner.gnm1.ann1.H9DKU3 Arachis hypogaea HOM05D006535 ORTHO05D008548 1.0e-200 703.7 544 70.8
AUR62021906 Chenopodium quinoa HOM05D006535 ORTHO05D008548 3.0e-200 702.2 469 76.1
vmacro15802 Vaccinium macrocarpon HOM05D006535 ORTHO05D008548 4.0e-200 701.8 502 73.3
Lsat_1_v5_gn_1_129581 Lactuca sativa HOM05D006535 ORTHO05D008548 6.8e-200 701.0 532 68.4
AL6G47860 Arabidopsis lyrata HOM05D006535 ORTHO05D008548 3.4e-199 698.7 526 69.4
AT4G04320 Arabidopsis thaliana HOM05D006535 ORTHO05D008548 5.7e-199 698.0 522 70.5
ECA248G3623 Erigeron canadensis HOM05D006535 ORTHO05D008548 9.8e-199 697.2 518 69.5
arahy.Tifrunner.gnm1.ann1.P3I999 Arachis hypogaea HOM05D006535 ORTHO05D008548 1.7e-198 696.4 544 70.4
CARHR253140 Cardamine hirsuta HOM05D006535 ORTHO05D008548 3.7e-198 695.3 529 69.8
Prupe.I000100 Prunus persica HOM05D006535 ORTHO05D008548 7.0e-197 691.0 455 78.2
Ah.09g234560 Amaranthus hybridus HOM05D006535 ORTHO05D008548 9.2e-197 690.6 542 67.5
Migut.H01587 Erythranthe guttata HOM05D006535 ORTHO05D008548 1.6e-196 689.9 526 69.0
Sp6g04530 Schrenkiella parvula HOM05D006535 ORTHO05D008548 1.3e-195 686.8 527 68.5
Carub.0006s3215 Capsella rubella HOM05D006535 ORTHO05D008548 2.3e-195 686.0 526 69.0
A03p29930 Brassica napus HOM05D006535 ORTHO05D008548 2.5e-194 682.6 522 68.6
BcaC01g04564 Brassica carinata HOM05D006535 ORTHO05D008548 7.3e-194 681.0 522 68.4
Oeu049693.4 Olea europaea HOM05D006535 ORTHO05D008548 1.0e-192 677.2 594 63.5
Aa31LG9G9880 Aethionema arabicum HOM05D006535 ORTHO05D008548 6.8e-192 674.5 532 68.0
CAN.G23.21 Capsicum annuum HOM05D006535 ORTHO05D008548 4.9e-190 668.3 524 66.2
Thhalv10028619m.g Eutrema salsugineum HOM05D006535 ORTHO05D008548 5.4e-189 664.8 479 71.2
BcaB01g02601 Brassica carinata HOM05D006535 ORTHO05D008548 1.6e-185 653.3 522 66.9
DCAR_024986 Daucus carota HOM05D006535 ORTHO05D008548 2.1e-185 652.9 504 67.5
BraA03t12182Z Brassica rapa HOM05D006535 ORTHO05D008548 1.2e-183 647.1 522 66.1
C03p36220 Brassica napus HOM05D006535 ORTHO05D008548 2.6e-183 646.0 522 65.9
BolC3t15931H Brassica oleracea HOM05D006535 ORTHO05D008548 2.6e-183 646.0 522 65.9
unitig_61.g26097 Utricularia gibba HOM05D006535 ORTHO05D008548 2.2e-182 642.9 500 66.2
ATR0686G032 Amborella trichopoda HOM05D006535 ORTHO05D008548 1.2e-180 637.1 529 65.0
EL10Ac8g20123 Beta vulgaris HOM05D006535 ORTHO05D008548 1.2e-177 627.1 415 74.5
SEGI_21824 Sequoiadendron giganteum HOM05D006535 ORTHO05D008548 5.8e-175 618.2 523 62.0
Nitab4.5_0002668g0020 Nicotiana tabacum HOM05D006535 ORTHO05D008548 6.4e-174 614.8 476 67.2
FAN25G2414 Fragaria x ananassa HOM05D006535 ORTHO05D008548 1.6e-172 610.1 536 65.3
HPP92_010356 Vanilla planifolia HOM05D006535 ORTHO05D008548 3.3e-170 602.4 517 63.8
Manes.17G027900 Manihot esculenta HOM05D006535 ORTHO05D008548 1.6e-169 600.1 539 61.8
CDE06G1909 Ceratophyllum demersum HOM05D006535 ORTHO05D008548 2.7e-164 582.8 543 59.1
Zm00001eb099100 Zea mays HOM05D006535 ORTHO05D008548 8.4e-158 561.2 446 65.7
Os09g0394100 Oryza sativa ssp. japonica HOM05D006535 ORTHO05D008548 4.6e-156 555.4 516 58.3
Hma1.2p1_1358F.1_g277950 Hydrangea macrophylla HOM05D006535 ORTHO05D008548 4.5e-151 538.9 338 81.7
TPR.G33068 Trifolium pratense HOM05D006535 ORTHO05D008548 2.2e-142 510.0 352 77.0
Mapoly0112s0027 Marchantia polymorpha HOM05D006535 ORTHO05D008548 2.2e-134 483.4 478 53.3
Lj1C1235T17 Lonicera japonica HOM05D006535 ORTHO05D008548 4.6e-132 475.7 513 54.0
AagrBONN_evm.TU.Sc2ySwM_117.3852 Anthoceros agrestis HOM05D006535 ORTHO05D008548 1.3e-131 474.2 531 50.8
SMO367G0626 Selaginella moellendorffii HOM05D000208 ORTHO05D008548 1.3e-126 457.6 487 51.7
Pp3c1_9420 Physcomitrium patens HOM05D006535 ORTHO05D008548 1.7e-121 440.7 504 48.0
Nitab4.5_0000005g0020 Nicotiana tabacum HOM05D006535 ORTHO05D008548 1.8e-120 437.2 372 64.0
Sabra04G0002800 Salix brachista HOM05D006535 ORTHO05D008548 3.6e-116 422.9 329 71.1
PGSC0003DMG401021462 Solanum tuberosum HOM05D006535 ORTHO05D008548 9.7e-114 414.8 310 70.6
Peaxi162Scf00294g01013 Petunia axillaris HOM05D006535 ORTHO05D008548 2.8e-105 386.7 484 46.9
SGA_v2.0_scaffold89G27482 Striga asiatica HOM05D006535 ORTHO05D008548 5.9e-95 352.4 269 67.3
Prupe.4G015900 Prunus persica HOM05D006535 ORTHO05D008548 8.0e-92 342.0 224 75.4
PGSC0003DMG402021462 Solanum tuberosum HOM05D006535 ORTHO05D008548 3.2e-72 276.9 212 64.2
CBR_g2794 Chara braunii HOM05D006535 ORTHO05D008548 2.3e-54 217.6 243 47.3
Atru.chr10.2274 Acer truncatum HOM05D006535 ORTHO05D008548 6.8e-51 206.1 128 79.7
TPR.G13151 Trifolium pratense HOM05D006535 ORTHO05D008548 1.3e-44 185.3 114 78.1
Cre02.g145200 Chlamydomonas reinhardtii HOM05D006535 ORTHO05D008548 1.2e-42 178.7 438 32.4
RcHm_v2.0_Chr3g0487171 Rosa chinensis HOM05D006535 ORTHO05D008548 7.1e-40 169.5 133 66.9
Eucgr.E03995 Eucalyptus grandis HOM05D006535 ORTHO05D000824 8.7e-38 162.5 106 75.5
Cpa.g.c42047 Carica papaya HOM05D006535 ORTHO05D008548 8.4e-33 146.0 78 87.2
Solyc02g036290.4 Solanum lycopersicum HOM05D006535 ORTHO05D008548 7.4e-29 132.9 91 69.2
BolC9t56193H Brassica oleracea HOM05D006535 ORTHO05D008548 6.2e-28 129.8 307 34.5
C09p33590 Brassica napus HOM05D006535 ORTHO05D008548 1.2e-26 125.6 305 33.4
CBR_g2795 Chara braunii HOM05D006535 ORTHO05D008548 1.2e-26 125.6 111 54.1
Solyc02g036300.3 Solanum lycopersicum HOM05D006535 ORTHO05D008548 7.1e-24 116.3 109 54.1
Nitab4.5_0017473g0010 Nicotiana tabacum HOM05D006535 ORTHO05D008548 9.6e-21 105.9 141 43.3
RcHm_v2.0_Chr5g0002771 Rosa chinensis HOM05D006535 ORTHO05D008548 4.1e-19 100.5 63 77.8
Sopen02g011690 Solanum pennellii HOM05D006535 ORTHO05D008548 3.8e-17 94.0 132 45.5
Solyc02g036310.4 Solanum lycopersicum HOM05D006535 ORTHO05D008548 8.4e-17 92.8 134 47.0
Carub.0007s3335 Capsella rubella HOM05D006535 ORTHO05D008548 2.7e-15 87.8 119 43.7
A09p26400 Brassica napus HOM05D006535 ORTHO05D033081 9.0e-11 72.8 297 26.6
C03p62470 Brassica napus HOM05D006535 ORTHO05D042350 1.9e-08 65.1 161 31.1
BolC3t18504H Brassica oleracea HOM05D006535 ORTHO05D042350 1.9e-08 65.1 161 31.1
BcaC02g09432 Brassica carinata HOM05D006535 ORTHO05D008548 2.1e-07 61.6 34 82.4


User provided reference genes

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