Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000103 Carpinus fangiana HOM05D006508 ORTHO05D003378 6.5e-63 243.8 117 100.0
Cfa000102 Carpinus fangiana HOM05D006508 ORTHO05D003378 4.1e-49 198.0 112 83.0
Cfa000129 Carpinus fangiana HOM05D006508 ORTHO05D003378 7.5e-43 177.2 113 77.0
Cfa000130 Carpinus fangiana HOM05D006508 ORTHO05D003378 7.5e-43 177.2 113 77.0
Haze_06883 Corylus avellana HOM05D006508 ORTHO05D003378 6.1e-37 157.5 106 71.7
Haze_06882 Corylus avellana HOM05D006508 ORTHO05D003378 8.0e-37 157.1 106 71.7
Haze_06893 Corylus avellana HOM05D006508 ORTHO05D003378 1.7e-31 139.4 106 63.2
Cfa000104 Carpinus fangiana HOM05D006508 ORTHO05D003378 2.4e-25 119.0 109 56.9
Cfa000101 Carpinus fangiana HOM05D006508 ORTHO05D003378 9.2e-25 117.1 96 62.5
Haze_06892 Corylus avellana HOM05D006508 ORTHO05D003378 2.8e-21 105.5 115 47.8
Cfa000132 Carpinus fangiana HOM05D006508 ORTHO05D003378 8.0e-21 104.0 106 50.0
Prupe.4G013200 Prunus persica HOM05D000275 ORTHO05D003378 1.3e-18 96.7 110 41.8
Prupe.4G217000 Prunus persica HOM05D000275 ORTHO05D003378 3.2e-17 92.0 109 39.4
MD10G1328900 Malus domestica HOM05D000275 ORTHO05D003378 7.0e-17 90.9 107 39.3
FvH4_3g01190 Fragaria vesca HOM05D000275 ORTHO05D003378 2.7e-16 89.0 109 41.3
Cfa000131 Carpinus fangiana HOM05D006508 ORTHO05D003378 3.5e-16 88.6 107 47.7
QL04p068109 Quercus lobata HOM05D006508 ORTHO05D003378 1.0e-15 87.0 107 43.0
QL07p003185 Quercus lobata HOM05D006508 ORTHO05D003378 1.0e-15 87.0 107 42.1
QL07p003201 Quercus lobata HOM05D006508 ORTHO05D003378 1.7e-15 86.3 107 41.1
QL04p068115 Quercus lobata HOM05D006508 ORTHO05D003378 3.9e-15 85.1 107 42.1
RcHm_v2.0_Chr5g0047311 Rosa chinensis HOM05D006508 ORTHO05D003378 1.9e-14 82.8 109 36.7
TAR626G1122 Trochodendron aralioides HOM05D000275 ORTHO05D003378 2.5e-14 82.4 102 42.2
CiPaw.10G076000 Carya illinoinensis HOM05D006508 ORTHO05D003378 3.3e-14 82.0 105 39.0
TAR629G2992 Trochodendron aralioides HOM05D006508 ORTHO05D003378 5.6e-14 81.3 86 43.0
CiPaw.09G100900 Carya illinoinensis HOM05D006508 ORTHO05D003378 7.3e-14 80.9 105 39.0
CiPaw.10G075800 Carya illinoinensis HOM05D006508 ORTHO05D003378 1.6e-13 79.7 106 38.7
Cpa.g.c39334 Carica papaya HOM05D000275 ORTHO05D003378 4.7e-13 78.2 105 38.1
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 4.7e-13 78.2 96 42.7
TAR629G3202 Trochodendron aralioides HOM05D000275 ORTHO05D003378 4.7e-13 78.2 96 40.6
Nn1g07322 Nelumbo nucifera HOM05D000275 ORTHO05D003378 1.1e-12 77.0 108 37.0
RcHm_v2.0_Chr5g0075671 Rosa chinensis HOM05D006508 ORTHO05D003378 1.1e-12 77.0 109 36.7
Dinv20118 Davidia involucrata HOM05D006508 ORTHO05D003378 2.3e-12 75.9 110 35.5
TPR.G13489 Trifolium pratense HOM05D006508 ORTHO05D003378 3.1e-12 75.5 110 34.5
CiPaw.09G100300 Carya illinoinensis HOM05D006508 ORTHO05D003378 4.0e-12 75.1 106 38.7
Rhsim02G0104700 Rhododendron simsii HOM05D000275 ORTHO05D003378 4.0e-12 75.1 106 37.7
Dinv20121 Davidia involucrata HOM05D006508 ORTHO05D003378 5.2e-12 74.7 108 36.1
Medtr3g056640 Medicago truncatula HOM05D006508 ORTHO05D003378 5.2e-12 74.7 110 34.5
PGR044G0303 Punica granatum HOM05D006508 ORTHO05D003378 1.5e-11 73.2 100 36.0
Thecc.06G230700 Theobroma cacao HOM05D006508 ORTHO05D003378 1.5e-11 73.2 109 38.5
TPR.G4368 Trifolium pratense HOM05D006508 ORTHO05D003378 1.5e-11 73.2 110 32.7
FAN21G1243 Fragaria x ananassa HOM05D000275 ORTHO05D003378 2.6e-11 72.4 99 34.3
FAN21G0761 Fragaria x ananassa HOM05D000275 ORTHO05D003378 4.4e-11 71.6 94 37.2
TPR.G39085 Trifolium pratense HOM05D006508 ORTHO05D003378 4.4e-11 71.6 110 31.8
TPR.G25278 Trifolium pratense HOM05D006508 ORTHO05D003378 5.8e-11 71.2 110 31.8
Lalb_Chr07g0188461 Lupinus albus HOM05D000275 ORTHO05D003378 7.5e-11 70.9 111 34.2
Lalb_Chr07g0188521 Lupinus albus HOM05D000275 ORTHO05D003378 7.5e-11 70.9 111 34.2
CiPaw.09G101000 Carya illinoinensis HOM05D000275 ORTHO05D003378 9.9e-11 70.5 106 34.9
COL.COLO4_26711 Corchorus olitorius HOM05D006508 ORTHO05D003378 9.9e-11 70.5 105 34.3
TPR.G25293 Trifolium pratense HOM05D006508 ORTHO05D003378 9.9e-11 70.5 110 31.8
HPP92_019919 Vanilla planifolia HOM05D000275 ORTHO05D003378 9.9e-11 70.5 103 35.0
Thecc.04G124500 Theobroma cacao HOM05D000275 ORTHO05D003378 1.3e-10 70.1 126 34.9
TPR.G16537 Trifolium pratense HOM05D006508 ORTHO05D003378 1.3e-10 70.1 110 30.9
Medtr3g464130 Medicago truncatula HOM05D006508 ORTHO05D003378 1.7e-10 69.7 96 36.5
Gohir.D07G080100 Gossypium hirsutum HOM05D000275 ORTHO05D003378 2.9e-10 68.9 107 36.4
PSO832G3328 Papaver somniferum HOM05D000275 ORTHO05D003378 2.9e-10 68.9 112 34.8
PSO210G2170 Papaver somniferum HOM05D000275 ORTHO05D003378 3.7e-10 68.6 112 33.9
COL.COLO4_26721 Corchorus olitorius HOM05D006508 ORTHO05D003378 4.9e-10 68.2 105 33.3
Dinv20122 Davidia involucrata HOM05D006508 ORTHO05D003378 6.4e-10 67.8 110 34.5
Medtr3g046515 Medicago truncatula HOM05D006508 ORTHO05D003378 6.4e-10 67.8 107 31.8
COL.COLO4_03647 Corchorus olitorius HOM05D006508 ORTHO05D003378 8.3e-10 67.4 79 38.0
Gorai.001G085000 Gossypium raimondii HOM05D000275 ORTHO05D003378 8.3e-10 67.4 107 35.5
COL.COLO4_26709 Corchorus olitorius HOM05D006508 ORTHO05D003378 1.1e-09 67.0 105 33.3
Dinv20119 Davidia involucrata HOM05D006508 ORTHO05D003378 1.1e-09 67.0 110 34.5
Dinv20120 Davidia involucrata HOM05D006508 ORTHO05D003378 1.1e-09 67.0 110 34.5
Sabra09G0016700 Salix brachista HOM05D000275 ORTHO05D000181 1.1e-09 67.0 111 36.9
Gohir.A07G075600 Gossypium hirsutum HOM05D000275 ORTHO05D003378 1.4e-09 66.6 107 32.7
Medtr3g046540 Medicago truncatula HOM05D006508 ORTHO05D003378 1.4e-09 66.6 107 32.7
Medtr3g046590 Medicago truncatula HOM05D006508 ORTHO05D003378 1.4e-09 66.6 107 31.8
Psat6g066360 Pisum sativum HOM05D006508 ORTHO05D003378 1.4e-09 66.6 107 32.7
Medtr3g046530 Medicago truncatula HOM05D006508 ORTHO05D003378 1.9e-09 66.2 107 31.8
TPR.G25291 Trifolium pratense HOM05D000275 ORTHO05D003378 1.9e-09 66.2 102 32.4
Dinv07381 Davidia involucrata HOM05D006508 ORTHO05D003378 2.4e-09 65.9 110 33.6
Medtr0071s0070 Medicago truncatula HOM05D006508 ORTHO05D003378 3.2e-09 65.5 107 31.8
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 4.1e-09 65.1 101 33.7
FvH4_2g02840 Fragaria vesca HOM05D006508 ORTHO05D003378 4.1e-09 65.1 76 39.5
Lalb_Chr12g0203601 Lupinus albus HOM05D006508 ORTHO05D003378 4.1e-09 65.1 110 31.8
Thecc.06G230300 Theobroma cacao HOM05D000275 ORTHO05D003378 4.1e-09 65.1 102 34.3
Lalb_Chr12g0203591 Lupinus albus HOM05D006508 ORTHO05D003378 7.1e-09 64.3 110 31.8
Medtr3g046350 Medicago truncatula HOM05D008977 ORTHO05D003378 7.1e-09 64.3 95 34.7
Oeu043634.1 Olea europaea HOM05D010533 ORTHO05D003378 7.1e-09 64.3 95 31.6
Phvul.006G186900 Phaseolus vulgaris HOM05D006508 ORTHO05D003378 7.1e-09 64.3 87 34.5
FAN20G2281 Fragaria x ananassa HOM05D006508 ORTHO05D003378 9.2e-09 63.9 76 39.5
Psat0s5273g0040 Pisum sativum HOM05D006508 ORTHO05D003378 9.2e-09 63.9 102 33.3
HPP92_021879 Vanilla planifolia HOM05D006508 ORTHO05D003378 9.2e-09 63.9 95 31.6
FAN24G0993 Fragaria x ananassa HOM05D006508 ORTHO05D003378 1.2e-08 63.5 76 39.5
Medtr3g046580 Medicago truncatula HOM05D006508 ORTHO05D003378 1.2e-08 63.5 107 31.8
TWI38G0468 Tripterygium wilfordii HOM05D000275 ORTHO05D003378 1.2e-08 63.5 105 33.3
Nn2g13360 Nelumbo nucifera HOM05D000275 ORTHO05D003378 1.6e-08 63.2 85 34.1
Medtr2g062600 Medicago truncatula HOM05D000275 ORTHO05D000181 2.1e-08 62.8 100 34.0
TWI38G1593 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 2.1e-08 62.8 105 31.4
CSS0031389 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 2.7e-08 62.4 109 35.8
CANSAT56G3402 Cannabis sativa HOM05D006508 ORTHO05D003378 2.7e-08 62.4 125 30.4
Lalb_Chr20g0108251 Lupinus albus HOM05D000275 ORTHO05D000181 2.7e-08 62.4 99 37.4
Manes.12G052803 Manihot esculenta HOM05D006508 ORTHO05D003378 2.7e-08 62.4 107 31.8
Medtr3g464110 Medicago truncatula HOM05D000275 ORTHO05D003378 2.7e-08 62.4 84 38.1
CSS0033505 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 3.5e-08 62.0 106 33.0
Glyma.15G265900 Glycine max HOM05D000275 ORTHO05D000181 3.5e-08 62.0 82 41.5
Hma1.2p1_0660F.1_g197500 Hydrangea macrophylla HOM05D000275 ORTHO05D003378 3.5e-08 62.0 112 36.6
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 3.5e-08 62.0 109 34.9
TPR.G10946 Trifolium pratense HOM05D006508 ORTHO05D003378 3.5e-08 62.0 70 40.0
Os03g0808500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D003378 4.6e-08 61.6 81 38.3
Actinidia12821 Actinidia chinensis HOM05D000275 ORTHO05D003378 6.0e-08 61.2 102 34.3
CiPaw.09G101100 Carya illinoinensis HOM05D006508 ORTHO05D003378 6.0e-08 61.2 90 34.4
CSS0012199 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 7.8e-08 60.8 96 35.4
Psat0s13238g0040 Pisum sativum HOM05D000275 ORTHO05D003378 7.8e-08 60.8 83 33.7
RcHm_v2.0_Chr6g0247621 Rosa chinensis HOM05D006508 ORTHO05D003378 7.8e-08 60.8 83 38.6
ECA240G2680 Erigeron canadensis HOM05D006508 ORTHO05D003378 1.0e-07 60.5 104 30.8
Gohir.D09G067950 Gossypium hirsutum HOM05D000275 ORTHO05D003378 1.3e-07 60.1 115 33.0
Oeu049720.1 Olea europaea HOM05D000275 ORTHO05D003378 1.3e-07 60.1 95 34.7
Sc18g0007010 Simmondsia chinensis HOM05D000275 ORTHO05D003378 1.3e-07 60.1 103 31.1
CiPaw.09G100400 Carya illinoinensis HOM05D006508 ORTHO05D003378 1.7e-07 59.7 97 30.9
FAN15G1252 Fragaria x ananassa HOM05D020255 ORTHO05D003378 1.7e-07 59.7 69 42.0
MBI16_g26175_MAGBIO Magnolia biondii HOM05D006508 ORTHO05D003378 1.7e-07 59.7 83 37.3
Manes.12G052802 Manihot esculenta HOM05D006508 ORTHO05D003378 1.7e-07 59.7 94 34.0
Phvul.005G045100 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 1.7e-07 59.7 92 41.3
Potri.009G025200 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.7e-07 59.7 87 37.9
Atru.chr1.2501 Acer truncatum HOM05D000275 ORTHO05D003378 2.3e-07 59.3 109 32.1
CSS0009125 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 2.3e-07 59.3 86 36.0
TPR.G26582 Trifolium pratense HOM05D006508 ORTHO05D003378 2.3e-07 59.3 100 28.0
TPR.G36231 Trifolium pratense HOM05D006508 ORTHO05D003378 3.0e-07 58.9 80 38.8
VMungo1080G1094 Vigna mungo HOM05D000275 ORTHO05D000181 3.0e-07 58.9 82 42.7
Nitab4.5_0001821g0020 Nicotiana tabacum HOM05D000275 ORTHO05D003378 5.1e-07 58.2 106 31.1
Ca_03265_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 8.6e-07 57.4 92 38.0
Dinv07380 Davidia involucrata HOM05D006508 ORTHO05D003378 8.6e-07 57.4 83 39.8
FAN25G2169 Fragaria x ananassa HOM05D006508 ORTHO05D003378 8.6e-07 57.4 70 35.7
Gohir.A07G075700 Gossypium hirsutum HOM05D006508 ORTHO05D003378 8.6e-07 57.4 88 33.0
Manes.12G053200 Manihot esculenta HOM05D006508 ORTHO05D003378 8.6e-07 57.4 94 33.0
RcHm_v2.0_Chr5g0001761 Rosa chinensis HOM05D000275 ORTHO05D003378 8.6e-07 57.4 107 33.6
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 1.1e-06 57.0 88 36.4
Glyma.08G161700 Glycine max HOM05D000275 ORTHO05D000181 1.5e-06 56.6 67 44.8
Lj3g0025801 Lotus japonicus HOM05D000275 ORTHO05D000181 1.5e-06 56.6 85 36.5
Nitab4.5_0010416g0010 Nicotiana tabacum HOM05D000275 ORTHO05D003378 1.5e-06 56.6 83 31.3
ATR1128G035 Amborella trichopoda HOM05D000275 ORTHO05D003378 1.9e-06 56.2 89 30.3
Gohir.A09G067950 Gossypium hirsutum HOM05D006508 ORTHO05D003378 1.9e-06 56.2 107 32.7
Lj3g0012102 Lotus japonicus HOM05D000275 ORTHO05D000181 1.9e-06 56.2 91 37.4
COL.COLO4_26712 Corchorus olitorius HOM05D006508 ORTHO05D003378 2.5e-06 55.8 67 40.3
Potri.001G232900 Populus trichocarpa HOM05D000275 ORTHO05D000181 3.3e-06 55.5 83 36.1
CANSAT11G2344 Cannabis sativa HOM05D000275 ORTHO05D000181 4.3e-06 55.1 98 32.7
TPR.G17317 Trifolium pratense HOM05D000275 ORTHO05D000181 4.3e-06 55.1 92 38.0
Psat1g130320 Pisum sativum HOM05D000275 ORTHO05D000181 5.6e-06 54.7 95 33.7
SEGI_03035 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 5.6e-06 54.7 92 31.5
Migut.M01356 Erythranthe guttata HOM05D000275 ORTHO05D003378 7.3e-06 54.3 103 30.1


User provided reference genes

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