Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000102 Carpinus fangiana HOM05D006508 ORTHO05D003378 2.9e-60 235.0 114 100.0
Cfa000103 Carpinus fangiana HOM05D006508 ORTHO05D003378 8.9e-49 196.8 112 83.0
Cfa000129 Carpinus fangiana HOM05D006508 ORTHO05D003378 1.7e-47 192.6 115 83.5
Cfa000130 Carpinus fangiana HOM05D006508 ORTHO05D003378 1.7e-47 192.6 115 83.5
Haze_06882 Corylus avellana HOM05D006508 ORTHO05D003378 1.8e-41 172.6 107 80.4
Haze_06883 Corylus avellana HOM05D006508 ORTHO05D003378 2.6e-40 168.7 107 78.5
Haze_06893 Corylus avellana HOM05D006508 ORTHO05D003378 1.2e-34 149.8 112 68.8
Cfa000104 Carpinus fangiana HOM05D006508 ORTHO05D003378 1.1e-27 126.7 110 61.8
Cfa000101 Carpinus fangiana HOM05D006508 ORTHO05D003378 1.5e-27 126.3 113 61.1
Cfa000132 Carpinus fangiana HOM05D006508 ORTHO05D003378 9.3e-22 107.1 107 51.4
Haze_06892 Corylus avellana HOM05D006508 ORTHO05D003378 3.5e-21 105.1 107 50.5
QL07p003185 Quercus lobata HOM05D006508 ORTHO05D003378 1.1e-17 93.6 108 47.2
Prupe.4G217000 Prunus persica HOM05D000275 ORTHO05D003378 1.8e-17 92.8 107 41.1
QL04p068109 Quercus lobata HOM05D006508 ORTHO05D003378 1.8e-17 92.8 108 47.2
QL07p003201 Quercus lobata HOM05D006508 ORTHO05D003378 1.8e-17 92.8 108 46.3
Prupe.4G013200 Prunus persica HOM05D000275 ORTHO05D003378 3.1e-17 92.0 108 41.7
QL04p068115 Quercus lobata HOM05D006508 ORTHO05D003378 6.9e-17 90.9 108 46.3
TAR626G1122 Trochodendron aralioides HOM05D000275 ORTHO05D003378 3.4e-16 88.6 99 47.5
FvH4_3g01190 Fragaria vesca HOM05D000275 ORTHO05D003378 4.5e-16 88.2 107 43.9
CiPaw.09G100900 Carya illinoinensis HOM05D006508 ORTHO05D003378 9.9e-16 87.0 107 43.0
MD10G1328900 Malus domestica HOM05D000275 ORTHO05D003378 1.3e-15 86.7 98 39.8
Nn1g07322 Nelumbo nucifera HOM05D000275 ORTHO05D003378 2.2e-15 85.9 105 42.9
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 6.4e-15 84.3 98 46.9
CiPaw.10G076000 Carya illinoinensis HOM05D006508 ORTHO05D003378 1.1e-14 83.6 107 40.2
TAR629G2992 Trochodendron aralioides HOM05D006508 ORTHO05D003378 1.4e-14 83.2 83 45.8
CiPaw.10G075800 Carya illinoinensis HOM05D006508 ORTHO05D003378 2.4e-14 82.4 108 40.7
Rhsim02G0104700 Rhododendron simsii HOM05D000275 ORTHO05D003378 2.4e-14 82.4 107 41.1
TAR629G3202 Trochodendron aralioides HOM05D000275 ORTHO05D003378 5.4e-14 81.3 93 45.2
Cpa.g.c39334 Carica papaya HOM05D000275 ORTHO05D003378 2.7e-13 79.0 107 40.2
CiPaw.09G100300 Carya illinoinensis HOM05D006508 ORTHO05D003378 3.5e-13 78.6 107 42.1
Dinv20118 Davidia involucrata HOM05D006508 ORTHO05D003378 4.6e-13 78.2 107 39.3
Thecc.04G124500 Theobroma cacao HOM05D000275 ORTHO05D003378 6.0e-13 77.8 109 42.2
Medtr3g056640 Medicago truncatula HOM05D006508 ORTHO05D003378 1.8e-12 76.3 107 36.4
RcHm_v2.0_Chr5g0047311 Rosa chinensis HOM05D006508 ORTHO05D003378 2.3e-12 75.9 107 36.4
CiPaw.09G101000 Carya illinoinensis HOM05D000275 ORTHO05D003378 6.7e-12 74.3 107 38.3
TPR.G13489 Trifolium pratense HOM05D006508 ORTHO05D003378 8.7e-12 73.9 110 35.5
Lalb_Chr12g0203611 Lupinus albus HOM05D006508 ORTHO05D003378 1.9e-11 72.8 105 37.1
HPP92_019919 Vanilla planifolia HOM05D000275 ORTHO05D003378 1.9e-11 72.8 100 38.0
Medtr3g046515 Medicago truncatula HOM05D006508 ORTHO05D003378 2.5e-11 72.4 104 35.6
TPR.G39085 Trifolium pratense HOM05D006508 ORTHO05D003378 2.5e-11 72.4 110 35.5
COL.COLO4_26709 Corchorus olitorius HOM05D006508 ORTHO05D003378 3.3e-11 72.0 107 38.3
COL.COLO4_26711 Corchorus olitorius HOM05D006508 ORTHO05D003378 3.3e-11 72.0 107 37.4
FAN21G1243 Fragaria x ananassa HOM05D000275 ORTHO05D003378 3.3e-11 72.0 97 37.1
Medtr3g046540 Medicago truncatula HOM05D006508 ORTHO05D003378 3.3e-11 72.0 104 36.5
Medtr3g046590 Medicago truncatula HOM05D006508 ORTHO05D003378 4.3e-11 71.6 104 36.5
RcHm_v2.0_Chr5g0075671 Rosa chinensis HOM05D006508 ORTHO05D003378 4.3e-11 71.6 107 36.4
TPR.G4368 Trifolium pratense HOM05D006508 ORTHO05D003378 4.3e-11 71.6 110 33.6
FAN21G0761 Fragaria x ananassa HOM05D000275 ORTHO05D003378 7.4e-11 70.9 92 40.2
Medtr3g046530 Medicago truncatula HOM05D006508 ORTHO05D003378 7.4e-11 70.9 104 35.6
Medtr0071s0070 Medicago truncatula HOM05D006508 ORTHO05D003378 9.6e-11 70.5 104 36.5
Medtr3g464130 Medicago truncatula HOM05D006508 ORTHO05D003378 9.6e-11 70.5 93 38.7
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 9.6e-11 70.5 107 40.2
Thecc.06G230300 Theobroma cacao HOM05D000275 ORTHO05D003378 1.3e-10 70.1 104 37.5
PSO210G2170 Papaver somniferum HOM05D000275 ORTHO05D003378 1.6e-10 69.7 109 35.8
PGR044G0303 Punica granatum HOM05D006508 ORTHO05D003378 1.6e-10 69.7 101 33.7
COL.COLO4_26721 Corchorus olitorius HOM05D006508 ORTHO05D003378 2.1e-10 69.3 107 34.6
Dinv20119 Davidia involucrata HOM05D006508 ORTHO05D003378 2.1e-10 69.3 110 38.2
Dinv20120 Davidia involucrata HOM05D006508 ORTHO05D003378 2.1e-10 69.3 110 38.2
CSS0033505 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 2.8e-10 68.9 107 39.3
COL.COLO4_03647 Corchorus olitorius HOM05D006508 ORTHO05D003378 2.8e-10 68.9 81 42.0
Dinv20122 Davidia involucrata HOM05D006508 ORTHO05D003378 2.8e-10 68.9 110 38.2
Lalb_Chr07g0188461 Lupinus albus HOM05D000275 ORTHO05D003378 2.8e-10 68.9 108 34.3
Lalb_Chr07g0188521 Lupinus albus HOM05D000275 ORTHO05D003378 2.8e-10 68.9 108 34.3
PSO832G3328 Papaver somniferum HOM05D000275 ORTHO05D003378 3.6e-10 68.6 109 35.8
TPR.G25293 Trifolium pratense HOM05D006508 ORTHO05D003378 3.6e-10 68.6 110 33.6
ATR1128G035 Amborella trichopoda HOM05D000275 ORTHO05D003378 4.8e-10 68.2 90 37.8
Dinv07381 Davidia involucrata HOM05D006508 ORTHO05D003378 4.8e-10 68.2 110 37.3
Migut.M01353 Erythranthe guttata HOM05D006508 ORTHO05D003378 4.8e-10 68.2 105 38.1
Gohir.D07G080100 Gossypium hirsutum HOM05D000275 ORTHO05D003378 4.8e-10 68.2 109 36.7
Medtr3g046580 Medicago truncatula HOM05D006508 ORTHO05D003378 4.8e-10 68.2 104 35.6
Oeu049720.1 Olea europaea HOM05D000275 ORTHO05D003378 4.8e-10 68.2 101 40.6
TWI38G0468 Tripterygium wilfordii HOM05D000275 ORTHO05D003378 4.8e-10 68.2 107 36.4
ECA240G2680 Erigeron canadensis HOM05D006508 ORTHO05D003378 6.2e-10 67.8 109 35.8
HPP92_021879 Vanilla planifolia HOM05D006508 ORTHO05D003378 6.2e-10 67.8 92 37.0
CiPaw.09G101100 Carya illinoinensis HOM05D006508 ORTHO05D003378 8.1e-10 67.4 92 39.1
Medtr3g046350 Medicago truncatula HOM05D008977 ORTHO05D003378 8.1e-10 67.4 93 37.6
Thecc.06G230500 Theobroma cacao HOM05D000275 ORTHO05D003378 8.1e-10 67.4 78 42.3
Thecc.06G230700 Theobroma cacao HOM05D006508 ORTHO05D003378 8.1e-10 67.4 111 35.1
Manes.12G052803 Manihot esculenta HOM05D006508 ORTHO05D003378 1.1e-09 67.0 105 34.3
TPR.G25291 Trifolium pratense HOM05D000275 ORTHO05D003378 1.1e-09 67.0 100 34.0
Gorai.001G085000 Gossypium raimondii HOM05D000275 ORTHO05D003378 1.4e-09 66.6 109 35.8
Sc18g0007010 Simmondsia chinensis HOM05D000275 ORTHO05D003378 1.4e-09 66.6 101 36.6
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 1.8e-09 66.2 99 34.3
TWI38G1593 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 1.8e-09 66.2 107 33.6
Gohir.A07G075600 Gossypium hirsutum HOM05D000275 ORTHO05D003378 2.4e-09 65.9 109 33.0
Nn2g13360 Nelumbo nucifera HOM05D000275 ORTHO05D003378 2.4e-09 65.9 83 36.1
Psat6g066360 Pisum sativum HOM05D006508 ORTHO05D003378 3.1e-09 65.5 107 33.6
CANSAT56G3402 Cannabis sativa HOM05D006508 ORTHO05D003378 4.0e-09 65.1 127 32.3
Oeu043634.1 Olea europaea HOM05D010533 ORTHO05D003378 6.9e-09 64.3 93 33.3
Os03g0808500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D003378 6.9e-09 64.3 79 41.8
FvH4_2g02840 Fragaria vesca HOM05D006508 ORTHO05D003378 1.2e-08 63.5 76 38.2
Nitab4.5_0001821g0020 Nicotiana tabacum HOM05D000275 ORTHO05D003378 1.2e-08 63.5 107 32.7
Psat0s5273g0040 Pisum sativum HOM05D006508 ORTHO05D003378 1.5e-08 63.2 99 34.3
MBI16_g26175_MAGBIO Magnolia biondii HOM05D006508 ORTHO05D003378 2.0e-08 62.8 83 41.0
FAN20G2281 Fragaria x ananassa HOM05D006508 ORTHO05D003378 2.6e-08 62.4 76 38.2
Psat0s13238g0040 Pisum sativum HOM05D000275 ORTHO05D003378 2.6e-08 62.4 80 35.0
CSS0031389 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 3.4e-08 62.0 107 37.4
FAN24G0993 Fragaria x ananassa HOM05D006508 ORTHO05D003378 3.4e-08 62.0 76 38.2
Nitab4.5_0010416g0010 Nicotiana tabacum HOM05D000275 ORTHO05D003378 3.4e-08 62.0 84 33.3
Thecc.06G230600 Theobroma cacao HOM05D006508 ORTHO05D003378 4.5e-08 61.6 105 35.2
Medtr2g062600 Medicago truncatula HOM05D000275 ORTHO05D000181 5.8e-08 61.2 102 33.3
Glyma.15G265900 Glycine max HOM05D000275 ORTHO05D000181 7.6e-08 60.8 93 37.6
Phvul.006G186900 Phaseolus vulgaris HOM05D006508 ORTHO05D003378 7.6e-08 60.8 82 34.1
Thecc.06G230400 Theobroma cacao HOM05D006508 ORTHO05D003378 7.6e-08 60.8 105 34.3
CSS0012199 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 9.9e-08 60.5 94 37.2
DCAR_003257 Daucus carota HOM05D006508 ORTHO05D003378 9.9e-08 60.5 105 36.2
FAN25G2169 Fragaria x ananassa HOM05D006508 ORTHO05D003378 1.3e-07 60.1 68 41.2
RcHm_v2.0_Chr5g0001761 Rosa chinensis HOM05D000275 ORTHO05D003378 1.3e-07 60.1 109 34.9
Gohir.A07G138100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.7e-07 59.7 74 47.3
Gohir.D07G143100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.7e-07 59.7 74 47.3
RcHm_v2.0_Chr6g0247621 Rosa chinensis HOM05D006508 ORTHO05D003378 1.7e-07 59.7 81 37.0
Dinv07380 Davidia involucrata HOM05D006508 ORTHO05D003378 2.2e-07 59.3 92 40.2
FAN15G1252 Fragaria x ananassa HOM05D020255 ORTHO05D003378 2.2e-07 59.3 68 39.7
Medtr3g464110 Medicago truncatula HOM05D000275 ORTHO05D003378 2.2e-07 59.3 84 36.9
Gorai.001G155200 Gossypium raimondii HOM05D000275 ORTHO05D000181 3.8e-07 58.5 55 54.5
TPR.G26582 Trifolium pratense HOM05D006508 ORTHO05D003378 3.8e-07 58.5 100 31.0
Lalb_Chr20g0108251 Lupinus albus HOM05D000275 ORTHO05D000181 4.9e-07 58.2 99 36.4
VMungo1080G1094 Vigna mungo HOM05D000275 ORTHO05D000181 4.9e-07 58.2 93 38.7
Ca_03265_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 6.4e-07 57.8 103 35.9
Migut.M01356 Erythranthe guttata HOM05D000275 ORTHO05D003378 6.4e-07 57.8 104 32.7
CANSAT11G2344 Cannabis sativa HOM05D000275 ORTHO05D000181 8.4e-07 57.4 96 35.4
COL.COLO4_26712 Corchorus olitorius HOM05D006508 ORTHO05D003378 8.4e-07 57.4 70 42.9
Phvul.005G045100 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 8.4e-07 57.4 103 36.9
Lj3g0025801 Lotus japonicus HOM05D000275 ORTHO05D000181 1.1e-06 57.0 101 35.6
Sc18g0007020 Simmondsia chinensis HOM05D000275 ORTHO05D003378 1.1e-06 57.0 107 34.6
CsaV3_7G031570 Cucumis sativus L. HOM05D000275 ORTHO05D000181 1.4e-06 56.6 99 37.4
MELO3C023497.2 Cucumis melo HOM05D000275 ORTHO05D000181 1.9e-06 56.2 99 36.4
TPR.G10946 Trifolium pratense HOM05D006508 ORTHO05D003378 1.9e-06 56.2 70 38.6
FvH4_3g01200 Fragaria vesca HOM05D006508 ORTHO05D003378 2.4e-06 55.8 109 33.0
ClCG09G003610 Citrullus lanatus HOM05D000275 ORTHO05D000181 3.2e-06 55.5 97 35.1
Glyma.08G161700 Glycine max HOM05D000275 ORTHO05D000181 3.2e-06 55.5 78 39.7
Migut.M01349 Erythranthe guttata HOM05D000275 ORTHO05D003378 4.2e-06 55.1 103 31.1
Lj3g0012102 Lotus japonicus HOM05D000275 ORTHO05D000181 4.2e-06 55.1 107 35.5
TPR.G17317 Trifolium pratense HOM05D000275 ORTHO05D000181 4.2e-06 55.1 109 34.9
Thecc.01G343500 Theobroma cacao HOM05D000275 ORTHO05D000181 5.5e-06 54.7 73 41.1
Sopen06g019870 Solanum pennellii HOM05D010533 ORTHO05D003378 7.1e-06 54.3 79 34.2
TPR.G36231 Trifolium pratense HOM05D006508 ORTHO05D003378 7.1e-06 54.3 80 37.5
CSS0009125 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 9.3e-06 53.9 84 35.7
DCAR_013213 Daucus carota HOM05D006508 ORTHO05D003378 9.3e-06 53.9 100 35.0
Migut.M01357 Erythranthe guttata HOM05D010533 ORTHO05D003378 9.3e-06 53.9 104 29.8
MD00G1187200 Malus domestica HOM05D000275 ORTHO05D000181 9.3e-06 53.9 81 37.0
Psat1g130320 Pisum sativum HOM05D000275 ORTHO05D000181 9.3e-06 53.9 97 34.0


User provided reference genes

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