Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000100 Carpinus fangiana HOM05D007192 ORTHO05D009034 1.3e-115 419.9 230 100.0
Haze_08662 Corylus avellana HOM05D007192 ORTHO05D009034 3.4e-55 219.2 148 91.2
QL05p069683 Quercus lobata HOM05D007192 ORTHO05D009034 3.3e-50 202.6 146 81.5
CiPaw.09G102500 Carya illinoinensis HOM05D007192 ORTHO05D009034 2.1e-49 199.9 148 76.4
Prupe.4G010200 Prunus persica HOM05D007192 ORTHO05D009034 1.7e-46 190.3 147 76.9
Atru.chr1.2446 Acer truncatum HOM05D007192 ORTHO05D009034 3.2e-45 186.0 149 77.2
Hma1.2p1_0657F.1_g197150 Hydrangea macrophylla HOM05D007192 ORTHO05D009034 4.1e-45 185.7 149 69.1
CANSAT56G2005 Cannabis sativa HOM05D007192 ORTHO05D009034 9.2e-45 184.5 146 73.3
Hma1.2p1_0657F.1_g197140 Hydrangea macrophylla HOM05D007192 ORTHO05D009034 9.2e-45 184.5 149 68.5
Thecc.06G233600 Theobroma cacao HOM05D007192 ORTHO05D009034 1.2e-44 184.1 149 77.2
MD05G1358000 Malus domestica HOM05D007192 ORTHO05D009034 1.6e-44 183.7 148 75.7
TWI38G0802 Tripterygium wilfordii HOM05D007192 ORTHO05D009034 1.6e-44 183.7 151 74.8
GSVIVG01003334001 Vitis vinifera HOM05D007192 ORTHO05D009034 2.7e-44 183.0 149 75.2
Ciclev10016735m.g Citrus clementina HOM05D007192 ORTHO05D009034 7.8e-44 181.4 148 77.0
MD10G1331900 Malus domestica HOM05D007192 ORTHO05D009034 3.0e-43 179.5 148 74.3
RcHm_v2.0_Chr5g0001481 Rosa chinensis HOM05D007192 ORTHO05D009034 8.6e-43 177.9 148 67.6
Dinv07405 Davidia involucrata HOM05D007192 ORTHO05D009034 1.5e-42 177.2 152 65.8
Dinv13967 Davidia involucrata HOM05D001152 ORTHO05D000967 1.5e-42 177.2 141 68.8
FvH4_3g00960 Fragaria vesca HOM05D007192 ORTHO05D009034 1.5e-42 177.2 149 67.1
FAN21G0227 Fragaria x ananassa HOM05D007192 ORTHO05D009034 1.5e-42 177.2 150 66.0
Glyma.07G265300 Glycine max HOM05D007192 ORTHO05D009034 3.3e-42 176.0 149 69.1
Potri.016G013500 Populus trichocarpa HOM05D007192 ORTHO05D009034 3.3e-42 176.0 152 70.4
Gohir.A06G205200 Gossypium hirsutum HOM05D007192 ORTHO05D009034 7.3e-42 174.9 148 73.0
Sabra06G0008700 Salix brachista HOM05D007192 ORTHO05D009034 7.3e-42 174.9 149 72.5
Duzib192G0317 Durio zibethinus HOM05D007192 ORTHO05D009034 9.5e-42 174.5 149 65.1
Gohir.D06G216300 Gossypium hirsutum HOM05D007192 ORTHO05D009034 9.5e-42 174.5 148 73.0
Gorai.010G249900 Gossypium raimondii HOM05D007192 ORTHO05D009034 9.5e-42 174.5 148 73.0
Duzib235G0907 Durio zibethinus HOM05D007192 ORTHO05D009034 4.7e-41 172.2 157 68.2
TAR629G2173 Trochodendron aralioides HOM05D007192 ORTHO05D009034 1.1e-40 171.0 150 68.0
Eucgr.E03926 Eucalyptus grandis HOM05D007192 ORTHO05D009034 1.4e-40 170.6 147 72.1
Glyma.17G008700 Glycine max HOM05D007192 ORTHO05D009034 1.4e-40 170.6 149 68.5
Lj4g0002454 Lotus japonicus HOM05D007192 ORTHO05D009034 2.3e-40 169.9 149 68.5
Phvul.003G083700 Phaseolus vulgaris HOM05D007192 ORTHO05D009034 4.4e-39 165.6 149 66.4
Nn1g07392 Nelumbo nucifera HOM05D007192 ORTHO05D009034 5.8e-39 165.2 150 68.0
Sc24g0000280 Simmondsia chinensis HOM05D007192 ORTHO05D009034 7.5e-39 164.9 146 71.2
Oeu016820.1 Olea europaea HOM05D007192 ORTHO05D009034 1.3e-38 164.1 149 63.1
CsaV3_6G048500 Cucumis sativus L. HOM05D007192 ORTHO05D009034 2.9e-38 162.9 150 70.7
Sed0016386 Sechium edule HOM05D007192 ORTHO05D009034 3.7e-38 162.5 149 65.8
ClCG01G021480 Citrullus lanatus HOM05D007192 ORTHO05D009034 8.3e-38 161.4 154 63.6
PSO541G1889 Papaver somniferum HOM05D007192 ORTHO05D009034 1.1e-37 161.0 150 70.7
PGR042G3283 Punica granatum HOM05D007192 ORTHO05D009034 3.2e-37 159.5 149 61.7
THA.LOC104799643 Tarenaya hassleriana HOM05D007192 ORTHO05D009034 3.2e-37 159.5 152 65.1
MELO3C007436.2 Cucumis melo HOM05D007192 ORTHO05D009034 4.1e-37 159.1 149 63.1
Medtr4g133070 Medicago truncatula HOM05D007192 ORTHO05D009034 4.1e-37 159.1 151 65.6
VMungo1215G1962 Vigna mungo HOM05D007192 ORTHO05D009034 5.4e-37 158.7 147 63.9
TPR.G37116 Trifolium pratense HOM05D007192 ORTHO05D009034 1.2e-36 157.5 151 65.6
arahy.Tifrunner.gnm1.ann1.E8J80R Arachis hypogaea HOM05D007192 ORTHO05D009034 1.6e-36 157.1 148 64.2
PSO675G6515 Papaver somniferum HOM05D007192 ORTHO05D009034 4.6e-36 155.6 150 69.3
Lalb_Chr07g0176981 Lupinus albus HOM05D007192 ORTHO05D009034 6.0e-36 155.2 152 59.2
PGSC0003DMG400013349 Solanum tuberosum HOM05D007192 ORTHO05D009034 6.6e-35 151.8 149 61.7
Sp6g24270 Schrenkiella parvula HOM05D007192 ORTHO05D009034 1.9e-34 150.2 152 62.5
Solyc11g012280.2 Solanum lycopersicum HOM05D007192 ORTHO05D009034 1.9e-34 150.2 149 61.1
MSTRG.14611 Avicennia marina HOM05D007192 ORTHO05D009034 3.3e-34 149.4 148 58.8
Aa31LG2G11450 Aethionema arabicum HOM05D007192 ORTHO05D009034 4.3e-34 149.1 150 60.7
Sopen11g007060 Solanum pennellii HOM05D007192 ORTHO05D009034 4.3e-34 149.1 149 60.4
Aqoxy2G00603 Aquilegia oxysepala HOM05D007192 ORTHO05D009034 5.6e-34 148.7 148 60.8
Ah.14g087620 Amaranthus hybridus HOM05D007192 ORTHO05D009034 9.5e-34 147.9 147 66.0
Hund23406 Selenicereus undatus HOM05D007192 ORTHO05D009034 1.2e-33 147.5 149 61.7
CAN.G1186.41 Capsicum annuum HOM05D007192 ORTHO05D009034 6.2e-33 145.2 149 60.4
CARHR192700 Cardamine hirsuta HOM05D007192 ORTHO05D009034 6.2e-33 145.2 149 62.4
SalBow8G5140 Salvia bowleyana HOM05D007192 ORTHO05D009034 6.2e-33 145.2 148 58.8
Nitab4.5_0000143g0180 Nicotiana tabacum HOM05D007192 ORTHO05D009034 2.4e-32 143.3 149 61.1
Thhalv10014703m.g Eutrema salsugineum HOM05D007192 ORTHO05D009034 6.8e-32 141.7 152 59.2
Peaxi162Scf00352g00210 Petunia axillaris HOM05D007192 ORTHO05D009034 2.0e-31 140.2 147 57.8
Nitab4.5_0011595g0010 Nicotiana tabacum HOM05D007192 ORTHO05D009034 2.6e-31 139.8 149 59.1
C03p11420 Brassica napus HOM05D007192 ORTHO05D009034 7.6e-31 138.3 151 58.9
BcaB05g22869 Brassica carinata HOM05D007192 ORTHO05D009034 2.2e-30 136.7 150 56.0
ATR0776G058 Amborella trichopoda HOM05D007192 ORTHO05D009034 8.4e-30 134.8 150 58.0
A03p09840 Brassica napus HOM05D007192 ORTHO05D009034 8.4e-30 134.8 150 58.7
BraA03t10299Z Brassica rapa HOM05D007192 ORTHO05D009034 8.4e-30 134.8 150 58.7
Carub.0006s1851 Capsella rubella HOM05D007192 ORTHO05D009034 1.4e-29 134.0 151 58.9
AT5G20130 Arabidopsis thaliana HOM05D007192 ORTHO05D009034 1.9e-29 133.7 150 58.0
FAN25G1082 Fragaria x ananassa HOM05D007192 ORTHO05D009034 1.9e-29 133.7 126 62.7
Potri.006G010600 Populus trichocarpa HOM05D007192 ORTHO05D009034 5.4e-29 132.1 126 67.5
Actinidia26860 Actinidia chinensis HOM05D007192 ORTHO05D009034 9.2e-29 131.3 101 81.2
BcaC03g13735 Brassica carinata HOM05D007192 ORTHO05D009034 1.2e-28 131.0 152 58.6
BolC2t07017H Brassica oleracea HOM05D007192 ORTHO05D009034 1.2e-28 131.0 152 58.6
HPP92_000005 Vanilla planifolia HOM05D007192 ORTHO05D009034 3.5e-28 129.4 151 49.7
AL6G31680 Arabidopsis lyrata HOM05D007192 ORTHO05D009034 6.0e-28 128.6 150 56.0
CDE08G0359 Ceratophyllum demersum HOM05D007192 ORTHO05D009034 1.0e-27 127.9 144 57.6
DCAR_004888 Daucus carota HOM05D007192 ORTHO05D009034 1.7e-27 127.1 156 57.1
vmacro03641 Vaccinium macrocarpon HOM05D007192 ORTHO05D009034 1.7e-27 127.1 154 47.4
Rhsim02G0145900 Rhododendron simsii HOM05D007192 ORTHO05D009034 3.0e-27 126.3 149 51.0
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 3.9e-27 125.9 144 53.5
BNapus_Darmor_BZH_scaffold_38p01780 Brassica napus HOM05D007192 ORTHO05D009034 5.1e-27 125.6 152 57.2
BraA02t05557Z Brassica rapa HOM05D007192 ORTHO05D009034 5.1e-27 125.6 152 57.2
HanXRQChr10g0285171 Helianthus annuus HOM05D007192 ORTHO05D009034 8.7e-27 124.8 146 54.8
ECA248G2945 Erigeron canadensis HOM05D007192 ORTHO05D009034 1.9e-26 123.6 145 56.6
Manes.09G076800 Manihot esculenta HOM05D007192 ORTHO05D009034 1.9e-26 123.6 118 68.6
Cc09_g00850 Coffea canephora HOM05D007192 ORTHO05D009034 7.3e-26 121.7 149 57.7
Lj2A261T34 Lonicera japonica HOM05D007192 ORTHO05D009034 6.2e-25 118.6 160 52.5
Lsat_1_v5_gn_0_23500 Lactuca sativa HOM05D007192 ORTHO05D009034 2.0e-23 113.6 147 53.7
unitig_37.g12189 Utricularia gibba HOM05D007192 ORTHO05D009034 3.4e-23 112.8 150 46.0
Psat4g005120 Pisum sativum HOM05D007192 ORTHO05D009034 1.2e-20 104.4 115 60.9
BcaB01g04802 Brassica carinata HOM05D007192 ORTHO05D009034 3.5e-20 102.8 97 52.6
BolC3t13616H Brassica oleracea HOM05D007192 ORTHO05D009034 3.5e-20 102.8 97 52.6
COL.COLO4_31887 Corchorus olitorius HOM05D007192 ORTHO05D009034 1.3e-17 94.4 74 64.9
BcaB01g04801 Brassica carinata HOM05D007192 ORTHO05D009034 2.1e-17 93.6 95 50.5
SEGI_14587 Sequoiadendron giganteum HOM05D007192 ORTHO05D009034 6.9e-16 88.6 152 44.7
SEGI_15910 Sequoiadendron giganteum HOM05D007192 ORTHO05D009034 9.0e-16 88.2 150 44.7
EL10Ac8g20192 Beta vulgaris HOM05D007192 ORTHO05D009034 7.1e-13 78.6 67 79.1
Migut.M01397 Erythranthe guttata HOM05D007192 ORTHO05D009034 9.3e-13 78.2 77 72.7
Pp3c14_17130 Physcomitrium patens HOM05D007192 ORTHO05D009034 2.3e-11 73.6 164 42.1
AUR62021857 Chenopodium quinoa HOM05D007192 ORTHO05D009034 3.3e-10 69.7 73 49.3
AagrBONN_evm.TU.Sc2ySwM_362.1438 Anthoceros agrestis HOM05D007192 ORTHO05D009034 1.8e-08 63.9 113 48.7
Mapoly0007s0283 Marchantia polymorpha HOM05D007192 ORTHO05D009034 4.0e-08 62.8 165 40.6
Mapoly0252s0005 Marchantia polymorpha HOM05D007192 ORTHO05D009034 4.0e-08 62.8 165 40.6
SGA_v2.0_scaffold4G01874 Striga asiatica HOM05D007192 ORTHO05D009034 4.0e-08 62.8 79 63.3
HanXRQChr17g0543701 Helianthus annuus HOM05D007192 ORTHO05D009034 7.6e-07 58.5 35 80.0
A02p06060 Brassica napus HOM05D007192 ORTHO05D009034 4.9e-06 55.8 31 80.6


User provided reference genes

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