Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 0.0e+00 1131.3 577 100.0
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 3.9e-302 1040.8 574 92.5
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.9e-270 934.5 518 90.5
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.7e-250 868.6 518 83.0
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 8.0e-247 857.1 519 82.7
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 2.3e-246 855.5 521 82.5
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 4.9e-244 847.8 518 80.3
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 3.1e-243 845.1 516 81.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.6e-242 842.8 525 80.2
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.6e-241 837.4 516 80.8
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.1e-240 836.6 516 81.0
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 5.6e-240 834.3 525 80.8
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 8.0e-239 830.5 523 80.5
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.5e-237 826.2 520 79.8
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.7e-236 822.8 521 77.7
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.7e-236 822.8 523 79.0
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 2.2e-236 822.4 525 78.5
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.1e-235 820.1 544 75.6
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.0e-234 815.8 526 76.0
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.3e-233 813.1 527 77.0
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 3.9e-233 811.6 518 77.8
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 8.6e-233 810.4 526 77.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.1e-232 810.1 525 77.7
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.4e-229 798.5 517 76.4
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 7.5e-229 797.3 524 77.1
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.8e-229 797.0 538 74.5
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.2e-228 795.8 532 75.4
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 8.3e-228 793.9 516 77.3
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.9e-227 792.7 523 76.3
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.4e-227 792.3 521 75.8
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.6e-226 789.6 529 76.2
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.5e-226 788.5 531 75.5
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 7.8e-226 787.3 526 73.8
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.1e-224 783.5 537 73.4
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.9e-224 782.7 519 74.6
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.2e-223 780.0 517 74.3
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.2e-223 780.0 535 74.2
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.8e-223 778.9 515 74.4
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 3.6e-223 778.5 526 74.1
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 3.6e-223 778.5 514 75.3
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 6.2e-223 777.7 529 72.6
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.1e-222 776.9 516 73.8
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.8e-222 776.2 512 76.6
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.1e-222 775.4 515 74.0
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 6.8e-222 774.2 526 74.5
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 2.6e-221 772.3 531 73.4
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.6e-221 772.3 528 73.5
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 3.4e-221 771.9 528 73.5
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 3.4e-221 771.9 528 73.5
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 3.4e-221 771.9 528 73.5
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 4.4e-221 771.5 528 73.9
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 5.8e-221 771.2 453 83.7
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 7.5e-221 770.8 514 75.1
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 3.7e-220 768.5 534 72.7
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 3.7e-220 768.5 530 73.0
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 4.9e-220 768.1 532 72.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 4.9e-220 768.1 530 73.2
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 6.4e-220 767.7 531 73.3
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 6.4e-220 767.7 532 72.6
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 8.3e-220 767.3 532 73.3
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.4e-219 766.5 532 72.4
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.4e-219 765.8 514 74.5
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 3.2e-219 765.4 532 72.2
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 3.2e-219 765.4 453 83.2
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 5.4e-219 764.6 519 74.2
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 4.6e-218 761.5 521 72.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 4.6e-218 761.5 521 72.7
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-217 760.0 521 72.9
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.3e-217 759.2 521 72.6
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 2.3e-217 759.2 524 72.5
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 5.1e-217 758.1 511 74.6
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.5e-216 756.5 517 72.5
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.9e-216 756.1 521 72.6
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.9e-216 756.1 519 73.2
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 9.5e-216 753.8 475 79.4
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-215 753.4 526 71.9
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 2.1e-215 752.7 514 73.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.8e-215 752.3 523 70.9
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 3.6e-215 751.9 516 74.2
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 3.1e-214 748.8 520 71.2
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.8e-213 744.6 521 72.0
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.1e-211 738.4 529 70.9
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 6.0e-210 734.6 465 78.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 7.8e-210 734.2 514 72.6
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 3.0e-209 732.3 465 78.3
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.9e-208 729.6 518 69.3
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 5.6e-208 728.0 515 70.7
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 9.6e-208 727.2 499 72.3
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.8e-207 725.7 523 70.6
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.1e-206 722.2 524 70.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.6e-205 719.2 426 83.3
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 5.8e-205 718.0 518 68.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.3e-204 716.8 530 69.4
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.1e-203 713.8 521 70.2
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.1e-203 713.8 523 69.2
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 2.4e-203 712.6 521 69.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 5.4e-203 711.4 514 69.8
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.2e-202 710.3 517 68.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.6e-202 709.9 514 69.6
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 3.5e-202 708.8 522 68.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 3.0e-201 705.7 518 68.1
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 5.1e-201 704.9 511 69.1
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.5e-200 703.4 514 67.7
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 4.3e-200 701.8 517 68.3
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.7e-196 689.9 517 66.5
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 4.6e-194 681.8 455 72.1
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.1e-192 677.2 444 76.1
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 9.3e-187 657.5 528 63.1
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 4.6e-186 655.2 453 70.2
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 8.2e-183 644.4 431 73.3
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 5.8e-181 638.3 525 61.3
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 4.2e-179 632.1 519 61.5
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 3.5e-178 629.0 544 59.9
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.3e-177 627.1 532 60.5
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 7.6e-173 611.3 393 76.6
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 5.0e-172 608.6 380 79.2
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.9e-169 599.0 387 76.0
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 4.3e-168 595.5 488 62.1
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 5.9e-165 585.1 517 58.4
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.3e-161 573.2 391 72.1
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 7.4e-160 568.2 518 59.1
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.6e-154 550.4 375 71.7
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 3.7e-151 539.3 351 76.4
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 2.5e-139 500.0 311 78.1
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 5.2e-137 492.3 344 71.2
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 6.1e-130 468.8 468 50.9
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.8e-126 457.2 316 69.9
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.0e-125 453.8 551 44.6
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 6.1e-122 442.2 457 48.6
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 6.0e-109 399.1 501 41.7
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.4e-104 383.3 542 38.6
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.4e-97 361.3 217 83.9
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 6.4e-95 352.4 254 71.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-76 291.6 194 73.2
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.6e-67 258.8 188 72.3
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 9.0e-65 252.3 175 74.3
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 4.3e-59 233.4 179 64.2
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 7.4e-59 232.6 154 76.0
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 6.7e-52 209.5 160 66.9
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.5e-51 207.6 142 72.5
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.8e-49 201.4 150 70.7
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.6e-45 188.3 159 58.5
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 9.4e-38 162.5 145 62.1
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.3e-36 157.9 97 79.4
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.2e-29 135.6 150 49.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.7e-26 124.0 110 58.2
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-22 112.1 76 76.3
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 4.7e-21 107.1 431 25.5
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.8e-19 99.4 504 23.8
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.2e-18 98.2 71 69.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.4e-12 79.0 67 55.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.4e-12 79.0 67 55.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 9.2e-09 66.2 50 62.0
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.7e-08 64.7 46 63.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.7e-07 62.0 51 58.8


User provided reference genes

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