Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.9e-307 1057.0 536 100.0
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.7e-270 934.5 518 90.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 7.9e-265 916.8 528 87.5
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.3e-255 884.4 530 81.5
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.7e-254 882.5 531 83.1
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 7.9e-249 863.6 526 79.8
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.8e-248 862.4 530 80.4
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-247 859.4 524 81.1
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.7e-247 857.4 530 79.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 3.7e-246 854.7 535 79.1
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.3e-243 846.3 532 79.9
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 2.9e-243 845.1 524 79.6
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.5e-242 842.8 530 77.7
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 8.8e-240 833.6 532 78.0
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.0e-239 832.4 537 77.8
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 3.3e-239 831.6 536 76.3
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 4.4e-239 831.2 537 77.8
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 5.7e-239 830.9 531 77.6
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.3e-238 829.7 534 77.5
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 3.7e-238 828.2 524 77.1
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.8e-238 827.8 524 76.7
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-237 826.6 527 76.7
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.7e-235 819.3 527 77.6
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.6e-233 811.6 525 75.8
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.6e-231 805.4 527 75.3
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.1e-229 800.0 531 76.1
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.4e-229 797.7 520 74.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 1.2e-228 796.6 539 73.5
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.9e-228 794.3 520 73.8
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.2e-227 792.3 529 75.4
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.5e-227 790.8 534 73.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.5e-226 789.6 522 73.6
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 3.2e-226 788.5 526 72.8
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.2e-225 786.6 516 76.4
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.2e-225 786.6 519 75.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 2.1e-225 785.8 522 74.1
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.1e-225 785.8 516 73.8
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.0e-225 783.9 531 74.2
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.0e-224 783.5 525 73.1
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 3.0e-224 781.9 532 74.1
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.8e-224 780.8 522 73.6
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.0e-223 779.2 523 72.7
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 4.4e-223 778.1 522 72.8
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 4.4e-223 778.1 546 71.6
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 7.5e-223 777.3 531 73.1
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 7.5e-223 777.3 531 73.1
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 7.5e-223 777.3 531 73.1
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 9.8e-223 776.9 531 73.4
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 3.7e-222 775.0 528 73.9
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 3.7e-222 775.0 526 73.2
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-221 773.5 528 73.5
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-221 773.5 528 73.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-221 773.1 528 73.5
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.4e-221 773.1 526 73.8
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.4e-221 772.3 528 71.8
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 3.1e-221 771.9 540 73.1
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 5.4e-221 771.2 538 72.5
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 7.0e-221 770.8 463 81.4
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 9.2e-221 770.4 531 73.1
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.6e-220 769.6 536 72.2
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 3.5e-220 768.5 536 71.6
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 3.5e-220 768.5 536 71.6
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.7e-219 766.1 538 72.3
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-219 766.1 536 71.5
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.8e-219 765.0 535 71.6
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 5.0e-219 764.6 523 71.9
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 6.6e-219 764.2 530 72.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 6.6e-219 764.2 522 73.8
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.1e-218 763.5 464 80.6
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.9e-218 762.7 535 71.4
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.9e-218 762.7 525 71.6
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 5.6e-218 761.1 516 73.6
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.2e-217 760.0 523 71.3
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.2e-217 760.0 527 73.4
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.6e-217 758.4 524 71.8
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 4.0e-216 755.0 514 73.2
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.2e-216 754.6 493 75.7
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.9e-216 753.8 527 70.8
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.6e-215 752.3 516 73.4
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.6e-215 752.3 522 71.3
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 2.7e-212 742.3 502 72.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 4.6e-212 741.5 522 72.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.3e-211 739.2 515 71.7
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.5e-210 736.5 512 70.3
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.5e-210 735.7 532 70.1
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 3.3e-210 735.3 479 76.4
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 4.3e-210 734.9 530 67.7
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 5.6e-210 734.6 532 67.3
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 7.3e-210 734.2 479 76.0
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 2.1e-209 732.6 531 69.3
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 2.8e-209 732.3 521 69.5
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 6.2e-209 731.1 539 68.6
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.8e-208 729.6 527 68.7
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 8.9e-208 727.2 525 69.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.0e-207 726.1 518 68.9
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 2.6e-207 725.7 531 68.9
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.7e-206 723.0 532 68.0
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 4.9e-206 721.5 529 68.8
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 8.3e-206 720.7 532 66.9
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.2e-205 718.8 436 81.0
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 9.2e-205 717.2 536 68.1
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 2.7e-204 715.7 520 69.0
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 3.9e-203 711.8 517 68.5
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 6.6e-203 711.1 517 68.5
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.3e-202 708.4 532 66.2
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.3e-194 682.2 541 62.7
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 3.3e-194 682.2 460 71.3
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.4e-192 676.8 455 73.8
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 4.6e-188 661.8 526 62.0
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 6.9e-184 647.9 457 68.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 4.4e-183 645.2 439 71.8
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 2.1e-180 636.3 529 60.9
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.0e-179 634.0 516 61.4
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.5e-178 629.4 534 59.4
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.1e-172 609.8 393 75.8
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.4e-170 601.3 387 74.9
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-169 600.5 520 59.0
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.1e-169 599.7 385 75.8
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.8e-168 596.7 460 64.1
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 4.9e-166 588.6 536 58.8
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-158 563.9 391 71.1
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 4.6e-156 555.4 382 70.9
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 4.5e-151 538.9 361 74.0
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.2e-140 504.2 322 76.4
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.0e-135 486.9 350 68.3
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.4e-131 474.2 326 70.9
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.3e-130 469.5 474 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.2e-124 451.1 533 44.8
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.1e-120 436.4 457 48.6
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 8.6e-110 401.7 511 41.1
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 2.2e-105 387.1 543 39.2
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 7.3e-101 372.1 227 82.8
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.9e-89 333.6 258 65.9
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 6.4e-73 279.3 194 69.1
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.1e-68 264.2 185 71.9
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 4.7e-68 263.1 183 73.8
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 2.8e-60 237.3 152 79.6
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 8.4e-57 225.7 171 64.9
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 5.1e-54 216.5 142 73.2
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 2.5e-53 214.2 155 69.7
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.9e-47 192.6 146 68.5
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 6.7e-46 189.5 159 57.9
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 2.7e-39 167.5 143 62.9
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.1e-35 155.6 97 76.3
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 2.2e-28 131.3 150 48.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.4e-24 118.6 107 56.1
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.9e-24 118.2 74 79.7
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.4e-19 102.1 502 23.1
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 3.1e-19 100.9 71 69.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 4.1e-19 100.5 436 25.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.7e-12 78.6 67 55.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.7e-12 78.6 67 55.2
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.0e-09 69.3 58 60.3
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 1.0e-09 69.3 50 68.0
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.9e-09 67.8 52 61.5
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 6.5e-09 66.6 63 57.1


User provided reference genes

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