Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.4e-69 266.2 136 100.0
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 2.6e-63 245.4 137 94.9
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.9e-29 132.9 155 60.6
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.0e-28 127.9 146 59.6
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 8.7e-27 124.0 146 60.3
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 3.3e-26 122.1 146 59.6
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 5.0e-22 108.2 134 53.7
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.1e-21 107.1 134 53.0
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 1.9e-21 106.3 137 50.4
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 4.2e-21 105.1 142 50.0
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.7e-20 102.4 136 50.7
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 6.1e-20 101.3 139 49.6
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 6.1e-20 101.3 140 50.0
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 7.9e-20 100.9 134 49.3
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.1e-18 97.1 134 46.3
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.5e-18 96.7 136 49.3
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.5e-18 96.7 138 50.7
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 2.5e-18 95.9 134 49.3
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.3e-18 95.5 139 47.5
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 1.7e-17 93.2 139 46.0
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 2.2e-17 92.8 131 47.3
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 2.2e-17 92.8 131 47.3
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 2.8e-17 92.4 134 47.0
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.8e-17 91.7 134 46.3
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.3e-17 91.3 129 48.8
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 6.3e-17 91.3 141 45.4
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 8.2e-17 90.9 144 48.6
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 8.2e-17 90.9 145 50.3
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 1.4e-16 90.1 142 47.9
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.4e-16 89.4 136 45.6
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 2.4e-16 89.4 132 50.0
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.3e-16 88.2 131 48.1
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 6.9e-16 87.8 149 47.7
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.9e-16 87.8 131 48.1
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 9.1e-16 87.4 160 48.1
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.2e-15 87.0 135 48.1
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 2.0e-15 86.3 139 48.9
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.6e-15 85.9 146 43.2
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 2.6e-15 85.9 140 48.6
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.4e-15 85.5 134 46.3
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 4.5e-15 85.1 135 48.1
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 4.5e-15 85.1 141 44.7
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 4.5e-15 85.1 133 50.4
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 5.9e-15 84.7 144 45.8
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.7e-15 84.3 131 47.3
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.7e-15 84.3 131 47.3
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.7e-14 83.2 145 46.9
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 5.0e-14 81.6 129 46.5
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 5.0e-14 81.6 136 48.5
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 5.0e-14 81.6 135 43.7
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 8.5e-14 80.9 138 46.4
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 1.9e-13 79.7 134 38.8
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 9.4e-13 77.4 132 43.2
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 9.4e-13 77.4 134 44.0
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 1.2e-12 77.0 162 41.4
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 1.6e-12 76.6 130 42.3
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 2.1e-12 76.3 140 42.9
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 2.7e-12 75.9 153 40.5
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 4.7e-12 75.1 128 39.8
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 4.7e-12 75.1 142 43.0
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 7.9e-12 74.3 110 40.0
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.8e-11 73.2 156 41.7
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.8e-11 73.2 132 38.6
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 2.3e-11 72.8 130 41.5
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.3e-11 72.8 132 38.6
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 3.9e-11 72.0 136 39.0
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 3.9e-11 72.0 122 45.1
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.1e-11 71.6 156 41.0
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 5.1e-11 71.6 138 43.5
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 5.1e-11 71.6 134 39.6
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 8.8e-11 70.9 137 43.1
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 8.8e-11 70.9 165 38.8
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.1e-10 70.5 134 35.8
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 1.1e-10 70.5 149 44.3
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 1.5e-10 70.1 137 40.1
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.5e-10 70.1 134 36.6
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.5e-10 70.1 134 36.6
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 1.5e-10 70.1 130 42.3
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 2.0e-10 69.7 136 39.0
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 5.7e-10 68.2 136 40.4
Sed0024469 Sechium edule HOM05D004793 ORTHO05D004423 5.7e-10 68.2 125 43.2
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.4e-10 67.8 156 39.7
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 9.7e-10 67.4 137 38.7
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 9.7e-10 67.4 135 40.7
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 9.7e-10 67.4 146 39.0
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.3e-09 67.0 137 39.4
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.7e-09 66.6 143 39.2
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 2.2e-09 66.2 159 38.4
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 2.2e-09 66.2 140 42.1
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 2.8e-09 65.9 143 44.8
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 4.8e-09 65.1 137 38.0
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 6.3e-09 64.7 135 43.0
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 1.1e-08 63.9 79 54.4
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 1.4e-08 63.5 167 37.7
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 1.8e-08 63.2 138 38.4
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.8e-08 63.2 134 35.8
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 2.4e-08 62.8 132 42.4
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 2.4e-08 62.8 141 34.8
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 4.1e-08 62.0 155 38.7
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 4.1e-08 62.0 154 38.3
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 5.3e-08 61.6 151 41.1
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 7.0e-08 61.2 150 38.0
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 9.1e-08 60.8 161 38.5
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 1.2e-07 60.5 123 41.5
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 1.2e-07 60.5 150 36.0
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 2.0e-07 59.7 137 38.7
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.0e-07 59.7 137 38.7
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.0e-07 59.7 137 39.4
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.0e-07 59.7 137 38.7
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.0e-07 59.7 137 38.7
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.6e-07 59.3 137 38.0
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.5e-07 58.5 137 38.0
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.7e-07 57.8 130 40.0
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 1.0e-06 57.4 133 39.8
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.7e-06 56.6 141 32.6
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 1.7e-06 56.6 136 36.0
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 2.2e-06 56.2 155 34.2
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 2.2e-06 56.2 134 35.8
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 2.2e-06 56.2 135 34.1
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 2.9e-06 55.8 140 36.4
FAN21G1828 Fragaria x ananassa HOM05D020126 ORTHO05D004423 2.9e-06 55.8 162 35.8
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 2.9e-06 55.8 133 38.3
Gorai.002G096900 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.8e-06 55.5 105 42.9
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 3.8e-06 55.5 139 36.0
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 3.8e-06 55.5 141 36.2
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.0e-06 55.1 134 37.3
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.0e-06 55.1 134 37.3
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 8.5e-06 54.3 134 35.8


User provided reference genes

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