Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 3.2e-37 157.9 80 100.0
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 1.7e-25 119.0 77 81.8
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 2.2e-25 118.6 76 76.3
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 8.2e-25 116.7 75 78.7
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 1.4e-24 115.9 79 75.9
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 1.8e-24 115.5 64 87.5
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 1.8e-24 115.5 60 93.3
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 1.8e-24 115.5 68 83.8
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 2.4e-24 115.2 76 75.0
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 3.1e-24 114.8 76 75.0
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 3.1e-24 114.8 79 74.7
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 5.3e-24 114.0 76 76.3
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 6.9e-24 113.6 67 82.1
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 6.9e-24 113.6 76 76.3
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 9.1e-24 113.2 73 76.7
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 9.1e-24 113.2 71 83.1
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 9.1e-24 113.2 71 77.5
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 1.2e-23 112.8 72 80.6
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 1.2e-23 112.8 71 78.9
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 1.2e-23 112.8 62 85.5
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 1.5e-23 112.5 70 78.6
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 1.5e-23 112.5 65 83.1
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 1.5e-23 112.5 66 81.8
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 1.5e-23 112.5 76 75.0
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 2.0e-23 112.1 68 83.8
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 2.0e-23 112.1 75 77.3
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 2.0e-23 112.1 77 72.7
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 2.6e-23 111.7 74 74.3
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 2.6e-23 111.7 80 75.0
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 3.4e-23 111.3 75 77.3
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 3.4e-23 111.3 69 82.6
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 3.4e-23 111.3 68 82.4
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 4.5e-23 110.9 71 78.9
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 4.5e-23 110.9 71 78.9
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 4.5e-23 110.9 71 78.9
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 4.5e-23 110.9 71 78.9
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 4.5e-23 110.9 76 75.0
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 4.5e-23 110.9 75 77.3
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 4.5e-23 110.9 67 80.6
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 7.7e-23 110.2 74 71.6
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 7.7e-23 110.2 75 73.3
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 7.7e-23 110.2 74 73.0
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 1.3e-22 109.4 62 85.5
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.3e-22 109.4 76 73.7
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 1.3e-22 109.4 67 77.6
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 1.7e-22 109.0 78 70.5
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 1.7e-22 109.0 72 77.8
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 1.7e-22 109.0 72 76.4
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 1.7e-22 109.0 67 79.1
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 2.2e-22 108.6 74 74.3
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 2.2e-22 108.6 74 75.7
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 2.9e-22 108.2 58 89.7
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 2.9e-22 108.2 72 76.4
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 2.9e-22 108.2 62 82.3
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.9e-22 108.2 76 73.7
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 3.8e-22 107.8 76 73.7
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 3.8e-22 107.8 74 75.7
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 3.8e-22 107.8 61 83.6
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 3.8e-22 107.8 72 79.2
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 5.0e-22 107.5 56 89.3
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 6.5e-22 107.1 73 71.2
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 6.5e-22 107.1 73 71.2
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 6.5e-22 107.1 73 71.2
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 8.5e-22 106.7 56 87.5
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 8.5e-22 106.7 56 87.5
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 8.5e-22 106.7 72 72.2
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 1.1e-21 106.3 71 71.8
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 1.1e-21 106.3 65 76.9
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 1.1e-21 106.3 79 68.4
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 1.4e-21 105.9 76 73.7
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 1.4e-21 105.9 63 84.1
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 1.9e-21 105.5 54 90.7
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 3.2e-21 104.8 62 82.3
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 3.2e-21 104.8 60 83.3
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 3.2e-21 104.8 75 72.0
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 4.2e-21 104.4 76 69.7
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 4.2e-21 104.4 76 69.7
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 4.2e-21 104.4 76 69.7
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 5.5e-21 104.0 65 75.4
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 5.5e-21 104.0 76 69.7
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 5.5e-21 104.0 75 72.0
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 7.2e-21 103.6 76 68.4
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 7.2e-21 103.6 73 67.1
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 1.2e-20 102.8 76 68.4
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 2.1e-20 102.1 60 78.3
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 7.9e-20 100.1 58 79.3
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 2.3e-19 98.6 105 55.2
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 3.9e-19 97.8 53 88.7
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 6.7e-19 97.1 64 71.9
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 3.3e-18 94.7 109 53.2
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 3.3e-18 94.7 48 89.6
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 4.4e-18 94.4 58 81.0
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 5.7e-18 94.0 48 87.5
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 7.4e-18 93.6 61 72.1
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 9.7e-18 93.2 67 73.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 9.7e-18 93.2 56 82.1
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 1.7e-17 92.4 48 89.6
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 2.2e-17 92.0 62 75.8
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 2.2e-17 92.0 73 65.8
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 2.8e-17 91.7 47 91.5
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 2.8e-17 91.7 61 77.0
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 4.8e-17 90.9 46 93.5
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 1.1e-16 89.7 53 84.9
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 3.5e-15 84.7 44 86.4
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 3.5e-15 84.7 42 92.9
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 7.2e-13 77.0 49 75.5
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 7.2e-13 77.0 49 75.5
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 1.8e-11 72.4 37 91.9
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 3.0e-11 71.6 46 78.3
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.8e-09 65.1 43 67.4
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.8e-08 62.4 33 81.8
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.8e-08 62.4 33 81.8
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 3.1e-08 61.6 28 92.9
AagrBONN_evm.TU.Sc2ySwM_362.2152 Anthoceros agrestis HOM05D006885 ORTHO05D008606 1.0e-06 56.6 52 55.8
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 1.0e-06 56.6 74 51.4


User provided reference genes

Program Settings