Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 5.9e-68 260.8 135 100.0
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 9.5e-42 173.7 132 71.2
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 1.2e-39 166.8 138 67.4
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 1.2e-39 166.8 126 70.6
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 2.0e-39 166.0 138 67.4
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 1.3e-38 163.3 122 70.5
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 2.9e-38 162.2 135 65.2
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 4.9e-38 161.4 126 69.0
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 1.2e-36 156.8 136 65.4
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 2.7e-36 155.6 120 71.7
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 1.3e-35 153.3 135 62.2
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 2.3e-35 152.5 128 64.8
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 6.6e-35 151.0 134 62.7
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 1.5e-34 149.8 132 60.6
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 5.6e-34 147.9 133 59.4
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 1.2e-33 146.7 136 64.0
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 2.1e-33 146.0 118 63.6
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 2.8e-33 145.6 132 61.4
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 4.7e-33 144.8 115 69.6
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 6.2e-33 144.4 136 62.5
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 8.1e-33 144.1 135 63.7
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 1.1e-32 143.7 128 62.5
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 1.1e-32 143.7 132 62.1
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 1.4e-32 143.3 130 62.3
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 1.8e-32 142.9 136 61.8
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 1.8e-32 142.9 136 61.8
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.8e-32 142.9 135 61.5
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 1.8e-32 142.9 138 58.7
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 2.4e-32 142.5 128 63.3
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 2.4e-32 142.5 137 59.9
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 2.4e-32 142.5 137 59.9
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 3.1e-32 142.1 127 63.0
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 3.1e-32 142.1 122 60.7
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 3.1e-32 142.1 128 61.7
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 4.0e-32 141.7 137 59.9
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 6.9e-32 141.0 128 60.9
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 6.9e-32 141.0 133 60.9
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 1.2e-31 140.2 132 58.3
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 1.5e-31 139.8 110 70.0
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.0e-31 139.4 135 57.8
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 2.6e-31 139.0 127 62.2
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.6e-31 139.0 131 60.3
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 4.4e-31 138.3 135 57.8
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 4.4e-31 138.3 123 62.6
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 7.6e-31 137.5 131 59.5
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 9.9e-31 137.1 127 61.4
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 9.9e-31 137.1 135 57.0
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 9.9e-31 137.1 131 58.8
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 9.9e-31 137.1 139 58.3
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 3.8e-30 135.2 128 58.6
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 4.9e-30 134.8 129 58.1
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 6.4e-30 134.4 132 56.1
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 6.4e-30 134.4 123 61.8
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 8.4e-30 134.0 134 58.2
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 1.1e-29 133.7 131 56.5
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 1.1e-29 133.7 121 60.3
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.9e-29 132.9 130 56.9
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 1.9e-29 132.9 123 61.0
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 2.4e-29 132.5 131 58.0
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 3.2e-29 132.1 127 63.0
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 4.2e-29 131.7 121 61.2
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 4.2e-29 131.7 139 55.4
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 5.4e-29 131.3 127 63.8
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 7.1e-29 131.0 131 55.7
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 9.3e-29 130.6 132 58.3
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 9.3e-29 130.6 121 59.5
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 9.3e-29 130.6 121 59.5
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 1.2e-28 130.2 121 60.3
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 4.6e-28 128.3 124 62.1
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 4.6e-28 128.3 106 63.2
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 4.6e-28 128.3 132 56.8
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 6.0e-28 127.9 114 62.3
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 6.0e-28 127.9 148 54.1
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 7.8e-28 127.5 121 61.2
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 7.8e-28 127.5 131 56.5
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 7.8e-28 127.5 121 61.2
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 7.8e-28 127.5 131 56.5
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 7.8e-28 127.5 130 56.9
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 3.9e-27 125.2 133 53.4
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 5.1e-27 124.8 131 54.2
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 5.1e-27 124.8 137 54.7
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 6.6e-27 124.4 131 55.0
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.1e-26 123.6 124 58.1
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 1.1e-26 123.6 131 52.7
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 1.1e-26 123.6 133 57.1
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 1.5e-26 123.2 127 55.1
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 1.5e-26 123.2 106 61.3
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 1.9e-26 122.9 105 60.0
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 7.3e-26 120.9 116 59.5
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 6.2e-25 117.9 121 57.0
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 4.0e-24 115.2 120 53.3
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 5.3e-24 114.8 121 51.2
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 2.0e-23 112.8 121 51.2
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 2.6e-23 112.5 104 60.6
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.3e-17 93.6 110 48.2
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 2.4e-16 89.4 139 41.0
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 5.8e-15 84.7 119 42.0
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 3.5e-12 75.5 52 76.9
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 8.2e-09 64.3 88 38.6
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 1.3e-06 57.0 146 33.6
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 1.3e-06 57.0 146 33.6
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 2.2e-06 56.2 76 42.1
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 3.8e-06 55.5 65 41.5


User provided reference genes

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