Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 0.0e+00 1135.6 556 100.0
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.1e-258 896.3 460 93.3
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.0e-258 895.6 460 93.3
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.4e-258 894.4 460 91.5
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 7.4e-258 893.6 459 93.2
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.7e-258 893.3 460 93.0
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 3.7e-257 891.3 460 93.5
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.8e-257 891.0 460 92.8
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.4e-256 889.4 460 93.0
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 2.4e-256 888.6 461 92.6
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 2.4e-256 888.6 460 92.8
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.4e-256 888.6 460 92.0
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 9.1e-256 886.7 459 93.0
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.2e-255 886.3 460 94.3
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.2e-255 886.3 463 91.6
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.6e-255 885.9 460 92.6
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.0e-255 885.6 461 92.4
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 2.6e-255 885.2 460 93.0
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 3.5e-255 884.8 459 93.2
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 7.7e-255 883.6 460 92.2
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.0e-254 883.2 460 91.7
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.3e-254 882.9 460 92.6
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.7e-254 882.5 460 93.3
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 2.2e-254 882.1 461 92.4
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 3.8e-254 881.3 460 91.7
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 5.0e-254 880.9 459 91.9
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 6.5e-254 880.6 457 93.0
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 6.5e-254 880.6 479 89.1
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 8.5e-254 880.2 459 92.6
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.9e-253 879.0 460 91.3
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.9e-253 879.0 457 93.0
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 2.5e-253 878.6 460 92.6
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.2e-253 878.2 460 92.6
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 5.5e-253 877.5 457 92.3
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 5.5e-253 877.5 460 91.7
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 5.5e-253 877.5 460 92.2
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 7.2e-253 877.1 460 91.5
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 7.2e-253 877.1 458 92.4
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 7.2e-253 877.1 460 92.0
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 7.2e-253 877.1 460 92.0
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 7.2e-253 877.1 457 92.1
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 9.4e-253 876.7 459 92.4
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 9.4e-253 876.7 457 92.6
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.2e-252 876.3 460 91.7
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.6e-252 875.9 460 92.2
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 2.1e-252 875.5 460 92.2
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 2.1e-252 875.5 460 92.2
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 2.7e-252 875.2 458 92.1
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.7e-252 875.2 461 91.5
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 3.6e-252 874.8 460 92.8
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 4.7e-252 874.4 460 92.8
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 6.1e-252 874.0 460 92.0
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 8.0e-252 873.6 460 92.4
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 8.0e-252 873.6 460 92.8
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 8.0e-252 873.6 457 91.9
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 1.0e-251 873.2 460 92.6
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.4e-251 872.8 457 91.5
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.4e-251 872.8 460 91.7
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 2.3e-251 872.1 467 90.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.3e-251 872.1 460 90.4
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 3.0e-251 871.7 461 92.2
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 3.0e-251 871.7 459 92.8
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 3.0e-251 871.7 460 92.4
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 4.0e-251 871.3 459 92.8
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 5.2e-251 870.9 460 92.4
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 5.2e-251 870.9 460 90.9
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 6.7e-251 870.5 460 92.0
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 6.7e-251 870.5 441 94.1
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 8.8e-251 870.2 456 91.2
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 1.1e-250 869.8 460 92.4
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.1e-250 869.8 459 92.6
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.1e-250 869.8 456 91.2
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.1e-250 869.8 460 92.0
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 2.0e-250 869.0 460 91.5
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 5.7e-250 867.5 460 92.6
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 5.7e-250 867.5 460 90.4
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 5.7e-250 867.5 459 90.8
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 7.5e-250 867.1 457 91.5
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 7.5e-250 867.1 460 91.5
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.3e-249 866.3 474 88.8
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.7e-249 865.9 460 92.0
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 1.7e-249 865.9 460 92.2
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 2.2e-249 865.5 462 92.2
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 2.2e-249 865.5 465 90.5
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 2.2e-249 865.5 460 91.1
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 3.7e-249 864.8 460 90.0
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 3.7e-249 864.8 460 92.0
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 4.8e-249 864.4 460 90.9
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 4.8e-249 864.4 460 90.9
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 6.3e-249 864.0 457 91.7
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 8.2e-249 863.6 460 90.4
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.4e-248 862.8 460 91.5
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 1.8e-248 862.4 460 91.3
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 2.4e-248 862.1 459 91.1
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 3.1e-248 861.7 457 92.6
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.6e-247 859.4 451 92.2
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 2.0e-247 859.0 465 89.9
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.7e-247 858.6 461 89.8
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.0e-246 856.7 461 89.8
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.9e-246 855.1 457 91.2
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 6.5e-246 854.0 426 95.1
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.5e-245 852.8 458 91.5
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.9e-245 852.4 433 94.0
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 7.2e-245 850.5 461 89.2
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.6e-244 849.4 431 95.1
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 6.1e-244 847.4 434 94.0
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 8.0e-244 847.0 434 94.0
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 3.5e-239 831.6 431 91.6
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.2e-238 828.9 461 87.4
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.5e-237 826.2 451 89.1
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 8.0e-236 820.5 461 86.6
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 5.7e-234 814.3 410 92.0
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 6.3e-233 810.8 446 85.4
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 4.1e-232 808.1 410 91.2
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 5.0e-230 801.2 410 89.5
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 2.8e-228 795.4 437 85.4
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 7.5e-226 787.3 381 96.6
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.9e-225 785.4 382 95.5
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 6.4e-225 784.3 381 95.8
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.1e-224 783.5 381 95.5
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 9.2e-224 780.4 381 95.5
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 7.3e-221 770.8 409 87.5
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 1.1e-216 756.9 408 89.0
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 8.6e-214 747.3 460 80.4
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 3.3e-213 745.3 408 83.8
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 2.8e-212 742.3 358 96.6
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 6.2e-212 741.1 393 91.9
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 5.2e-211 738.0 409 83.1
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 6.8e-211 737.6 405 82.5
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 3.1e-195 685.6 454 76.7
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 9.9e-194 680.6 369 90.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.7e-193 679.9 360 90.0
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 3.4e-178 629.0 407 71.3
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 2.2e-169 599.7 331 89.4
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.4e-169 597.8 460 69.1
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.3e-164 583.9 289 93.8
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.6e-159 567.0 460 66.7
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.8e-158 563.5 460 66.3
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.3e-157 559.3 460 66.1
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.1e-150 535.4 279 90.3
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 8.8e-142 508.1 351 72.4
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 2.3e-118 430.3 261 74.7
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.2e-114 417.9 203 96.6
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 7.0e-99 365.5 180 92.2
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.5e-96 357.1 191 86.9
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.5e-80 304.7 146 97.3
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.0e-78 296.6 144 93.8
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 7.6e-77 292.4 148 91.9
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 9.3e-75 285.4 459 41.2
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.3e-68 265.0 164 83.5
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 1.9e-67 261.2 146 84.9
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 2.8e-63 247.3 127 88.2
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.3e-60 238.4 147 84.4
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.1e-54 217.2 259 43.6
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.0e-52 212.2 128 84.4
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 4.9e-52 209.9 101 96.0
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 6.5e-52 209.5 100 96.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.4e-52 209.1 102 96.1
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 6.5e-36 156.4 108 73.1
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 1.9e-35 154.8 101 76.2
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 3.4e-29 134.0 197 37.6
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 9.4e-27 125.9 65 90.8
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 9.4e-27 125.9 65 90.8
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 2.6e-21 107.8 50 96.0
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 2.6e-21 107.8 50 96.0
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 2.6e-21 107.8 67 70.1
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.5e-21 107.5 65 78.5
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.1e-19 102.4 47 95.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.4e-17 95.5 48 91.7
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-15 88.2 44 90.9
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 2.8e-15 87.8 42 95.2
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-14 85.9 44 88.6
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.4e-14 85.5 168 35.1
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 5.9e-13 80.1 71 56.3
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 1.3e-12 79.0 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.9e-12 77.8 72 56.9
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-12 77.4 39 87.2
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.5e-12 76.3 39 84.6
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.7e-10 71.2 61 80.3
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 2.3e-09 68.2 61 57.4
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.0e-09 67.4 61 65.6
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 7.0e-06 56.6 40 65.0


User provided reference genes

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