Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 0.0e+00 1424.8 713 100.0
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 3.2e-298 1028.1 709 70.5
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 4.1e-293 1011.1 706 69.7
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 4.1e-293 1011.1 713 69.1
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 6.1e-289 997.3 735 67.2
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 4.0e-288 994.6 694 68.3
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 5.2e-288 994.2 707 67.6
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 5.2e-288 994.2 710 67.5
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 8.3e-286 986.9 705 66.8
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 1.8e-285 985.7 715 67.7
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 4.1e-285 984.6 713 68.2
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 1.3e-283 979.5 710 66.2
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 2.3e-283 978.8 684 69.3
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 6.6e-283 977.2 712 67.8
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.1e-282 976.5 735 64.9
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 4.0e-280 968.0 699 66.2
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 5.2e-280 967.6 713 66.1
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 8.9e-280 966.8 680 67.9
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.3e-278 963.0 711 65.5
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 2.9e-278 961.8 710 65.4
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 1.1e-277 959.9 703 65.7
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.8e-277 959.1 706 66.9
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 4.1e-277 958.0 709 64.3
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 7.0e-277 957.2 746 63.5
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.6e-276 956.1 663 68.2
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 1.0e-275 953.4 738 64.2
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.7e-275 952.6 707 66.1
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.9e-274 949.1 773 60.7
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 5.6e-274 947.6 727 65.5
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 3.6e-273 944.9 727 65.3
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 6.2e-273 944.1 671 66.3
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.1e-272 941.8 687 67.7
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 4.0e-272 941.4 676 67.2
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 4.4e-271 937.9 707 64.4
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 7.5e-271 937.2 707 64.6
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 1.4e-269 932.9 751 63.1
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 2.4e-269 932.2 654 67.1
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 2.4e-269 932.2 718 63.1
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 4.1e-269 931.4 710 62.0
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 1.6e-268 929.5 664 67.3
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 2.7e-268 928.7 707 64.6
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 1.7e-267 926.0 710 62.4
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 1.7e-267 926.0 690 66.5
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 6.6e-267 924.1 709 61.8
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.5e-266 922.9 712 62.1
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.9e-266 922.5 709 64.0
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 9.5e-266 920.2 707 62.0
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 4.7e-265 917.9 711 62.9
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 4.7e-265 917.9 706 63.3
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 4.7e-265 917.9 706 63.9
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 8.1e-265 917.1 676 65.2
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 2.3e-264 915.6 712 61.8
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 2.3e-264 915.6 707 62.8
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 4.0e-264 914.8 712 61.7
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 4.0e-264 914.8 701 63.9
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 6.8e-264 914.1 712 61.7
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 6.8e-264 914.1 707 62.4
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 3.4e-263 911.8 712 61.7
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 4.4e-263 911.4 709 61.4
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.8e-263 911.0 709 60.9
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 5.8e-263 911.0 758 60.0
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.7e-262 909.4 705 61.0
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 8.3e-262 907.1 707 62.7
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 1.9e-261 906.0 708 62.1
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 7.8e-260 900.6 707 62.2
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.3e-259 899.8 709 60.8
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.3e-259 899.8 708 62.0
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 3.0e-259 898.7 679 64.5
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 3.3e-258 895.2 708 61.2
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 7.3e-258 894.0 713 60.3
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 3.6e-257 891.7 648 65.7
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 6.2e-257 891.0 712 60.7
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 8.1e-257 890.6 707 60.0
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 1.4e-256 889.8 707 63.5
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.3e-256 889.0 736 59.2
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.5e-255 886.3 709 61.6
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.0e-255 885.9 719 61.8
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 1.1e-253 880.2 708 61.2
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.4e-253 879.8 611 68.2
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 7.1e-245 850.9 719 60.1
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 3.9e-243 845.1 573 70.2
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 3.1e-240 835.5 672 61.9
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 2.2e-238 829.3 663 60.0
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 2.1e-236 822.8 1008 45.8
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 4.3e-234 815.1 682 58.5
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 6.9e-232 807.7 551 69.0
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 7.6e-223 777.7 630 61.1
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 3.3e-218 762.3 615 61.0
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 4.3e-218 761.9 524 70.0
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 1.0e-214 750.7 702 54.8
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 3.6e-212 742.3 709 54.6
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 9.7e-210 734.2 576 62.8
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.8e-208 729.9 684 55.7
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.5e-207 726.9 482 71.2
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.4e-203 713.8 512 66.0
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 2.6e-186 656.4 637 53.4
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 1.8e-179 633.6 664 47.3
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.6e-172 610.5 678 46.8
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 3.0e-171 606.3 430 66.7
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.5e-149 534.3 408 61.0
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 7.5e-146 521.9 431 58.5
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 1.7e-145 520.8 392 65.1
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 3.2e-144 516.5 340 70.3
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 5.8e-138 495.7 519 46.4
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 4.3e-117 426.4 386 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 5.8e-114 416.0 439 47.8
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 4.6e-111 406.4 327 60.2
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 6.2e-108 396.0 347 55.3
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 5.1e-102 376.3 276 65.2
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 5.7e-101 372.9 293 61.8
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 8.2e-100 369.0 755 35.5
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.1e-96 358.6 434 45.6
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.5e-96 357.5 279 63.8
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 7.2e-88 329.3 351 49.0
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.4e-78 298.5 288 53.5
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 5.7e-77 293.1 233 60.9
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-71 275.4 385 37.9
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 2.0e-69 268.1 650 32.2
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 7.0e-67 259.6 432 36.3
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 3.7e-60 237.3 581 30.5
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 4.1e-43 180.6 279 39.1
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 6.0e-42 176.8 112 75.9
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 1.9e-40 171.8 354 36.7
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 4.0e-38 164.1 137 57.7
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.9e-36 157.9 215 42.8
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.2e-35 152.9 223 40.4
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 3.9e-33 147.5 112 68.8
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.1e-32 146.0 264 37.1
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 8.1e-31 139.8 100 67.0
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.7e-25 122.1 125 53.6
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 6.8e-22 110.2 89 50.6
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 2.6e-21 108.2 74 63.5
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 4.6e-18 97.4 95 47.4
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 5.6e-16 90.5 434 25.1
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 4.7e-15 87.4 150 43.3
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.4e-14 85.9 135 38.5
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.4e-14 85.1 64 64.1
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 9.0e-14 83.2 385 24.4
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.2e-13 82.8 46 76.1
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.4e-13 81.3 53 64.2
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.4e-13 80.9 46 73.9
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 1.7e-12 79.0 60 70.0
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.9e-12 77.4 46 71.7
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 2.4e-11 75.1 69 49.3
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.2e-11 74.7 103 42.7
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 3.3e-08 64.7 247 28.7
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 2.8e-07 61.6 53 58.5
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 3.6e-07 61.2 53 60.4


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