Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 0.0e+00 1182.5 593 100.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 4.1e-254 881.3 620 71.0
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 6.9e-254 880.6 598 72.7
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 6.9e-254 880.6 617 70.8
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 4.5e-253 877.9 620 70.6
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 4.5e-253 877.9 620 70.8
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.9e-251 872.5 620 70.6
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-247 859.0 621 70.5
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-247 859.0 621 70.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.2e-245 853.2 620 69.0
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 5.0e-244 847.8 634 69.4
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.5e-243 846.3 595 72.4
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 5.5e-243 844.3 602 71.1
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 2.2e-236 822.4 621 67.0
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 6.3e-231 804.3 621 65.2
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 5.7e-224 781.2 621 64.6
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 4.9e-223 778.1 623 63.9
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 4.1e-222 775.0 626 63.3
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 4.5e-221 771.5 624 62.8
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.2e-216 756.9 653 62.3
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 3.4e-216 755.4 628 62.4
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 3.9e-212 741.9 626 61.0
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.1e-211 740.3 588 64.6
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.6e-210 736.5 623 59.7
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 6.2e-210 734.6 625 60.0
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.4e-209 733.4 624 59.8
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 6.8e-209 731.1 607 61.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 2.6e-208 729.2 623 58.7
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 4.4e-208 728.4 598 62.5
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 4.9e-207 724.9 625 59.5
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 8.3e-207 724.2 617 61.1
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.9e-206 723.0 623 58.6
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 5.4e-206 721.5 616 60.1
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 9.2e-206 720.7 624 59.9
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.6e-205 719.9 588 64.5
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 6.0e-205 718.0 624 58.5
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.0e-204 715.7 606 60.4
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 5.0e-204 714.9 628 59.9
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 5.0e-204 714.9 511 69.9
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.9e-203 713.0 656 56.2
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.2e-202 710.3 622 60.1
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.6e-202 709.9 630 59.2
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 2.3e-201 706.1 628 58.4
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 5.8e-200 701.4 606 60.2
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.7e-199 699.9 626 58.6
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 4.9e-199 698.4 623 57.6
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 8.3e-199 697.6 625 57.8
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.9e-198 696.4 606 58.7
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 3.2e-198 695.7 603 59.7
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 4.1e-198 695.3 624 57.5
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 7.1e-198 694.5 626 56.9
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.2e-197 693.7 626 56.9
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 2.3e-196 689.5 618 56.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.9e-196 688.7 623 56.3
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 6.6e-196 688.0 630 56.7
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 8.6e-196 687.6 632 58.4
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 8.6e-196 687.6 640 56.1
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.2e-194 683.7 630 56.3
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 6.2e-194 681.4 628 57.2
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.4e-193 680.2 693 53.4
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.3e-191 673.7 627 55.8
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 3.8e-191 672.2 626 57.2
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 4.9e-191 671.8 628 55.9
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.1e-190 670.6 626 55.3
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.9e-190 669.8 627 54.7
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 5.4e-190 668.3 629 55.5
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 2.1e-189 666.4 628 55.4
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.7e-188 663.3 625 55.8
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 3.0e-188 662.5 625 55.4
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.9e-187 659.8 627 53.7
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 4.3e-187 658.7 623 55.1
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 4.3e-187 658.7 624 55.4
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 7.3e-187 657.9 626 54.5
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.2e-186 657.1 628 54.5
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 3.6e-186 655.6 623 54.6
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 8.1e-186 654.4 626 54.2
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 3.1e-185 652.5 624 54.0
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 5.2e-185 651.7 626 53.5
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 9.0e-185 651.0 628 53.5
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.5e-184 650.2 596 58.6
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 9.9e-184 647.5 622 53.9
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.3e-183 647.1 622 53.7
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.7e-183 646.7 626 54.0
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 3.8e-183 645.6 622 53.5
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 6.4e-183 644.8 622 53.5
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 8.4e-183 644.4 622 53.5
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.4e-182 643.7 624 52.7
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.9e-179 633.3 569 57.3
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 4.3e-179 632.1 634 52.4
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 1.8e-177 626.7 536 58.6
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 1.8e-177 626.7 663 51.1
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 3.1e-177 625.9 687 50.4
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 5.8e-176 621.7 622 53.2
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.2e-175 619.8 627 52.5
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 9.3e-174 614.4 627 52.6
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.9e-171 606.7 609 52.5
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 4.3e-171 605.5 634 50.0
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 4.8e-170 602.1 624 51.1
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 4.8e-162 575.5 626 49.5
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.8e-146 523.1 647 45.1
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.8e-146 523.1 647 45.1
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.4e-145 520.0 643 45.3
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 3.8e-143 512.7 628 45.9
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 8.8e-140 501.5 489 54.0
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.2e-136 491.1 622 45.2
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.9e-136 488.8 627 45.0
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.6e-125 454.1 660 40.9
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 3.0e-124 449.9 532 47.4
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 8.2e-122 441.8 636 39.5
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.0e-119 432.6 386 57.5
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.4e-116 424.5 405 54.3
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.6e-112 411.0 403 55.6
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.0e-103 379.4 408 52.2
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.5e-102 377.9 582 38.8
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 3.5e-96 356.7 493 41.4
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 6.0e-64 249.6 268 50.4
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 8.1e-61 239.2 651 29.2
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 2.4e-60 237.7 558 30.1
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 6.7e-55 219.5 628 27.9
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.7e-50 204.9 130 73.8
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.2e-50 204.5 164 62.8
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.1e-45 188.0 215 46.0
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 3.7e-45 187.2 246 42.7
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 3.4e-43 180.6 389 32.1
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 1.0e-42 179.1 141 59.6
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.2e-34 151.4 166 48.2
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.9e-33 148.3 164 48.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 8.8e-31 139.4 508 25.8
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 1.2e-27 129.0 114 55.3
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 6.5e-26 123.2 181 39.8
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.4e-23 115.5 237 34.6
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.9e-23 114.0 150 40.7
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 5.1e-23 113.6 91 64.8
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 3.7e-21 107.5 95 54.7
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 3.5e-19 100.9 89 58.4
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 3.8e-18 97.4 84 59.5
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 4.2e-17 94.0 71 64.8
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.2e-16 92.4 69 65.2
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 6.1e-16 90.1 167 35.3
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 6.7e-15 86.7 76 52.6
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.5e-14 85.5 127 44.1
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 7.7e-11 73.2 65 55.4
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 6.5e-10 70.1 52 67.3
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 5.5e-09 67.0 54 55.6
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.2e-08 65.9 52 55.8
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 2.1e-08 65.1 100 35.0
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.6e-08 64.3 43 69.8
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 8.0e-08 63.2 41 65.9
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 1.0e-07 62.8 75 46.7
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 1.0e-07 62.8 34 73.5
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 1.8e-07 62.0 45 68.9


User provided reference genes

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