Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 0.0e+00 2396.3 1285 100.0
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 8.5e-47 193.7 1495 25.2
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 1.4e-41 176.4 1303 26.1
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 7.7e-40 170.6 1353 26.4
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 8.5e-39 167.2 1338 25.3
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.1e-37 162.5 1383 26.6
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 6.7e-36 157.5 1337 25.2
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.0e-35 156.0 1373 24.3
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.8e-34 151.4 1374 25.3
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.3e-34 151.0 1436 26.4
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 8.2e-34 150.6 1374 25.1
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.2e-32 146.7 1390 23.8
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.3e-28 132.5 1326 24.3
Hma1.2p1_0815F.1_g222840 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 8.2e-26 124.0 330 35.5
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.1e-25 123.6 1359 24.4
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 4.1e-25 121.7 1359 24.4
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 4.5e-24 118.2 1375 23.3
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.5e-22 113.2 1463 23.3
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.6e-21 109.8 164 42.7
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 2.1e-21 109.4 1317 23.9
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 2.1e-21 109.4 110 58.2
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.6e-19 102.4 108 49.1
Cfa009271 Carpinus fangiana HOM05D005863 ORTHO05D003355 1.7e-18 99.8 443 28.7
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.8e-18 98.2 1335 24.1
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.4e-17 96.7 119 45.4
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 2.4e-17 95.9 82 57.3
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 4.1e-17 95.1 1347 23.0
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 7.0e-17 94.4 1398 23.3
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 7.7e-16 90.9 105 46.7
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.3e-15 89.4 1322 22.6
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.8e-15 88.6 1355 23.9
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 6.6e-15 87.8 1067 24.4
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.1e-14 87.0 1293 23.4
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.9e-14 86.3 1378 22.6
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 3.3e-14 85.5 1337 23.2
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 7.2e-14 84.3 115 42.6
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 9.5e-14 84.0 631 24.2
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 1.2e-13 83.6 1423 22.4
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 1.6e-13 83.2 105 42.9
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.1e-13 82.8 420 24.3
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.8e-13 82.4 81 51.9
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 3.6e-13 82.0 1341 22.7
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.6e-13 82.0 89 47.2
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.0e-12 80.5 261 28.0
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.4e-12 80.1 178 32.6
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 3.0e-12 79.0 83 48.2
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 8.9e-12 77.4 111 33.3
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.2e-11 77.0 1355 22.4
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.2e-11 77.0 1273 21.8
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.5e-11 76.6 92 39.1
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.5e-11 76.6 178 30.9
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.5e-11 76.6 1329 22.0
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.0e-11 76.3 1342 23.5
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.6e-11 75.9 137 37.2
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.4e-11 75.5 112 33.0
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 7.5e-11 74.3 90 43.3
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 9.8e-11 73.9 88 43.2
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 9.8e-11 73.9 113 37.2
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 1.7e-10 73.2 80 42.5
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 1.7e-10 73.2 80 38.8
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 3.7e-10 72.0 1319 23.0
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 4.9e-10 71.6 402 25.1
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 4.9e-10 71.6 95 38.9
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 6.3e-10 71.2 194 29.9
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.1e-09 70.5 74 44.6
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.1e-09 70.5 74 44.6
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 1.1e-09 70.5 104 34.6
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.1e-09 70.5 148 32.4
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 1.4e-09 70.1 79 43.0
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.4e-09 70.1 138 34.8
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.4e-09 69.3 675 21.8
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.4e-09 69.3 166 27.7
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 2.4e-09 69.3 74 43.2
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 2.4e-09 69.3 1334 23.6
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.1e-09 68.9 153 32.0
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 3.1e-09 68.9 386 24.9
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 3.1e-09 68.9 386 24.9
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.1e-09 68.9 1323 22.7
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 4.1e-09 68.6 94 43.6
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 5.4e-09 68.2 71 43.7
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 9.2e-09 67.4 1310 22.8
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 9.2e-09 67.4 124 36.3
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 9.2e-09 67.4 86 45.3
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 9.2e-09 67.4 138 32.6
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.6e-08 66.6 93 37.6
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.0e-08 66.2 1294 20.8
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.5e-08 65.5 92 34.8
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.5e-08 65.1 178 27.5
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 4.5e-08 65.1 1334 21.7
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 5.9e-08 64.7 251 29.5
CDE02G0225 Ceratophyllum demersum HOM05D028369 ORTHO05D028689 5.9e-08 64.7 265 28.7
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.8e-08 64.3 91 36.3
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 7.8e-08 64.3 94 35.1
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 7.8e-08 64.3 248 27.8
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 7.8e-08 64.3 304 27.3
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 7.8e-08 64.3 1555 21.8
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 7.8e-08 64.3 295 26.1
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.0e-07 63.9 77 37.7
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.3e-07 63.5 82 39.0
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.7e-07 63.2 209 29.2
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.7e-07 63.2 94 34.0
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.3e-07 62.8 312 23.7
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.3e-07 62.8 268 28.4
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.9e-07 62.4 75 38.7
MBI08_g04927_MAGBIO Magnolia biondii HOM05D028369 ORTHO05D028689 3.9e-07 62.0 365 26.8
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 3.9e-07 62.0 80 42.5
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.9e-07 62.0 341 25.5
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 3.9e-07 62.0 1388 22.3
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.9e-07 62.0 91 34.1
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 5.0e-07 61.6 89 36.0
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 6.6e-07 61.2 95 35.8
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 6.6e-07 61.2 708 23.0
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 6.6e-07 61.2 68 44.1
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 6.6e-07 61.2 67 41.8
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 8.6e-07 60.8 1377 21.1
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 8.6e-07 60.8 103 33.0
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 1.1e-06 60.5 205 25.4
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 1.1e-06 60.5 61 47.5
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 1.1e-06 60.5 109 32.1
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.5e-06 60.1 295 24.7
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 1.5e-06 60.1 93 31.2
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.9e-06 59.7 134 29.9
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.9e-06 59.7 145 31.0
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.9e-06 59.7 179 29.1
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 2.5e-06 59.3 142 31.7
Zm00001eb165220 Zea mays HOM05D005863 ORTHO05D003355 3.3e-06 58.9 89 40.4
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 4.3e-06 58.5 299 24.4
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 4.3e-06 58.5 615 21.0
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 5.6e-06 58.2 79 41.8
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.6e-06 58.2 68 38.2
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.6e-06 58.2 68 38.2
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.3e-06 57.8 197 25.9
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 7.3e-06 57.8 323 26.6
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 7.3e-06 57.8 62 41.9
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 9.5e-06 57.4 272 26.1


User provided reference genes

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