Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 1.1e-254 882.9 447 100.0
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 8.9e-153 544.3 447 63.1
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.1e-150 537.3 442 61.5
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 6.0e-149 531.6 442 60.4
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.0e-148 529.3 443 63.4
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 2.5e-147 526.2 447 61.1
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 3.3e-147 525.8 439 63.8
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 4.3e-147 525.4 439 64.0
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 3.1e-145 519.2 450 62.0
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 1.5e-144 516.9 438 62.1
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 2.0e-144 516.5 440 62.3
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 3.4e-144 515.8 441 61.5
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 6.4e-143 511.5 440 60.0
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 6.4e-143 511.5 456 59.2
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 6.6e-140 501.5 441 59.2
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.3e-139 499.2 457 57.8
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.6e-139 498.4 449 58.4
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 7.3e-139 498.0 404 62.4
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.2e-138 497.3 437 60.0
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 4.7e-138 495.4 419 61.3
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 6.2e-138 495.0 448 58.7
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 1.8e-137 493.4 436 59.6
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 2.6e-136 489.6 404 63.1
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.4e-136 489.2 448 58.3
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 1.3e-135 487.3 444 57.9
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 1.3e-135 487.3 419 60.6
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 2.2e-135 486.5 414 58.7
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 8.4e-135 484.6 455 56.3
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 8.4e-135 484.6 439 58.3
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 1.1e-134 484.2 411 60.6
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 1.4e-134 483.8 442 57.7
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 2.4e-134 483.0 407 61.7
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 3.2e-134 482.6 445 56.0
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 3.2e-134 482.6 445 55.7
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 4.6e-133 478.8 413 57.4
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.3e-132 477.2 442 57.0
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 1.7e-132 476.9 452 55.1
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 6.6e-132 474.9 407 61.4
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 8.7e-132 474.6 445 55.7
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 3.3e-131 472.6 415 59.3
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 4.3e-131 472.2 412 57.0
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 1.6e-130 470.3 405 59.8
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 1.4e-129 467.2 427 57.6
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 2.4e-129 466.5 409 57.9
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 4.0e-129 465.7 429 56.6
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 4.0e-129 465.7 413 58.4
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 5.3e-129 465.3 405 58.8
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 1.2e-128 464.2 450 54.2
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 1.5e-128 463.8 414 56.0
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 2.6e-128 463.0 410 57.1
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 4.4e-128 462.2 411 56.7
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 1.7e-127 460.3 406 57.9
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 2.2e-127 459.9 412 57.8
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 2.9e-127 459.5 425 57.4
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 4.9e-127 458.8 425 57.2
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 4.9e-127 458.8 420 55.5
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 1.1e-126 457.6 405 56.5
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 1.4e-126 457.2 448 54.0
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 1.9e-126 456.8 444 53.8
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 1.9e-126 456.8 461 55.3
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 2.4e-126 456.4 404 59.4
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 5.4e-126 455.3 426 55.9
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 7.1e-126 454.9 441 56.9
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 7.1e-126 454.9 415 56.1
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 1.2e-125 454.1 411 56.0
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 2.7e-125 453.0 412 55.1
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 3.5e-125 452.6 411 55.5
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 1.3e-124 450.7 427 54.3
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 1.3e-124 450.7 347 63.4
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 3.0e-124 449.5 420 57.1
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 2.5e-123 446.4 427 54.1
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 4.3e-123 445.7 402 57.7
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 4.3e-123 445.7 387 61.5
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 4.3e-123 445.7 418 57.2
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 3.6e-122 442.6 421 55.8
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 6.2e-122 441.8 421 54.4
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 6.2e-122 441.8 439 53.3
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 1.4e-121 440.7 409 56.7
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 3.1e-121 439.5 526 50.6
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.2e-120 437.6 444 56.3
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 2.6e-120 436.4 369 59.3
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 9.0e-113 411.4 400 55.2
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.3e-108 397.5 396 51.5
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.0e-103 381.3 438 49.3
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 5.1e-100 369.0 378 53.2
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 3.3e-99 366.3 391 50.4
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 1.4e-97 360.9 338 54.1
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.2e-94 349.4 406 47.8
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 2.7e-93 346.7 409 46.9
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 5.7e-91 339.0 281 61.6
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 3.1e-89 333.2 346 52.0
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 1.4e-86 324.3 279 60.9
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 3.2e-86 323.2 277 57.0
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.0e-80 303.9 336 48.5
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 1.6e-77 294.3 328 51.5
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 7.4e-75 285.4 275 53.8
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 3.1e-73 280.0 270 55.9
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 1.3e-58 231.5 392 38.8
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 2.8e-58 230.3 178 64.6
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.2e-56 224.9 303 42.6
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.2e-56 224.9 298 43.0
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 2.7e-56 223.8 242 50.0
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.3e-55 220.7 433 35.3
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.8e-49 201.1 182 55.5
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.6e-46 189.5 151 62.3
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.8e-44 184.5 151 60.9
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 2.0e-43 181.0 219 46.1
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 4.4e-43 179.9 240 42.5
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 1.7e-42 177.9 148 60.1
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.2e-42 177.6 145 60.0
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.6e-37 161.4 272 38.2
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.9e-30 137.9 122 52.5
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.3e-28 131.0 137 46.7
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 1.7e-26 124.8 129 51.2
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.9e-26 124.0 106 57.5
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 8.3e-26 122.5 106 57.5
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 5.2e-20 103.2 72 65.3
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 7.8e-16 89.4 337 27.9
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 3.9e-15 87.0 337 26.7
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 1.5e-14 85.1 344 26.2
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 3.3e-14 84.0 344 23.3
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 4.3e-14 83.6 344 24.4
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.1e-12 79.0 358 23.7
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.4e-12 78.6 336 24.4
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 1.4e-12 78.6 352 22.7
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 9.9e-11 72.4 348 25.0
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 1.7e-10 71.6 350 25.7
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 2.2e-10 71.2 67 55.2
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.2e-08 65.5 346 23.7
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.9e-06 58.2 38 63.2


User provided reference genes

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