Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 0.0e+00 1269.6 699 100.0
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 6.5e-126 455.7 726 44.5
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 2.5e-117 427.2 819 38.1
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 3.6e-116 423.3 722 40.9
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 5.7e-114 416.0 723 42.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.8e-113 413.7 702 43.0
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.8e-113 413.7 751 39.3
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.1e-112 410.2 723 40.5
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.0e-110 405.2 875 37.0
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.0e-110 405.2 648 44.6
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.2e-110 404.1 714 40.6
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.5e-109 401.4 718 40.7
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.5e-109 399.4 738 40.7
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.1e-108 397.5 816 36.4
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.6e-108 396.7 884 38.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 3.6e-108 396.7 879 36.2
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 6.1e-108 396.0 756 39.0
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 6.1e-108 396.0 715 40.0
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 5.7e-106 389.4 729 40.2
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.8e-104 384.4 786 39.6
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.2e-103 381.7 842 36.9
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 2.7e-103 380.6 740 39.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 5.0e-102 376.3 722 39.6
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.5e-101 374.8 677 40.8
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 3.3e-101 373.6 780 37.4
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.2e-101 372.5 731 37.6
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 9.5e-101 372.1 729 39.9
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.6e-100 371.3 723 40.9
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.4e-99 368.2 729 39.0
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 5.2e-99 366.3 718 38.4
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 5.2e-99 366.3 754 37.1
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.6e-98 364.0 723 38.5
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.4e-98 363.2 736 37.2
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 4.9e-97 359.8 712 38.8
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 8.3e-97 359.0 739 37.9
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.8e-96 357.8 704 39.2
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.1e-96 356.7 759 38.7
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.4e-96 356.3 779 37.6
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 7.8e-95 352.4 763 36.8
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.0e-94 352.1 684 41.1
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.3e-94 351.7 732 35.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.3e-93 347.1 728 35.7
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 9.5e-93 345.5 763 35.8
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.1e-92 344.4 752 36.7
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 8.0e-92 342.4 733 37.0
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.4e-91 341.7 785 36.2
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.1e-91 340.5 732 35.4
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.8e-91 339.3 734 36.1
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 6.8e-91 339.3 711 37.1
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 2.6e-90 337.4 742 37.6
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.6e-90 337.4 744 36.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.8e-90 336.3 762 37.3
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.5e-90 335.9 720 36.7
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 9.8e-90 335.5 720 36.8
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 9.8e-90 335.5 722 37.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 2.2e-89 334.3 716 38.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 6.4e-89 332.8 720 38.5
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 8.3e-89 332.4 754 36.5
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.1e-88 332.0 741 36.8
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.4e-88 331.6 742 36.1
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.4e-88 330.9 727 35.8
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.4e-88 329.7 716 35.8
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.2e-88 328.9 739 35.7
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.0e-86 325.5 916 34.1
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.9e-85 321.2 723 35.7
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 4.3e-85 320.1 707 36.5
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 5.6e-85 319.7 711 36.3
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.1e-83 315.5 747 35.1
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 6.8e-83 312.8 771 34.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 6.8e-83 312.8 711 36.8
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 8.9e-83 312.4 712 36.0
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 8.9e-83 312.4 751 34.4
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.2e-82 312.0 673 37.1
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.5e-82 311.6 710 36.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-81 307.8 706 36.3
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 2.2e-81 307.8 701 34.5
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.9e-81 307.4 702 37.5
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 4.9e-81 306.6 701 36.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 6.4e-81 306.2 700 37.4
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.5e-79 300.4 725 34.6
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 3.0e-78 297.4 709 36.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 6.6e-78 296.2 704 35.2
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.1e-77 295.4 701 36.2
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.1e-77 295.4 818 32.2
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 8.9e-75 285.8 708 35.3
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.5e-74 285.0 706 33.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 7.5e-74 282.7 844 31.9
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 9.9e-74 282.3 727 34.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.7e-73 281.6 705 34.8
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.4e-72 278.5 590 38.5
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.4e-72 278.5 799 33.7
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.9e-72 278.1 632 35.3
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.9e-72 278.1 715 33.7
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.2e-72 277.3 716 35.5
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 6.0e-71 273.1 647 35.2
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.0e-70 270.8 762 33.2
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 3.9e-70 270.4 777 32.7
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.9e-69 268.1 714 37.3
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 3.3e-69 267.3 756 34.9
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 5.6e-69 266.5 706 33.3
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.6e-68 263.8 754 32.2
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 8.1e-68 262.7 710 34.1
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.4e-67 261.9 726 35.1
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 5.2e-67 260.0 740 32.2
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 8.9e-67 259.2 719 32.7
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 3.8e-65 253.8 707 32.8
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 4.9e-65 253.4 779 31.6
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.9e-64 251.5 707 32.1
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.1e-60 238.0 591 36.9
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 3.8e-57 227.3 450 40.4
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 2.4e-56 224.6 607 33.8
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.6e-55 220.3 458 39.5
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 8.7e-54 216.1 745 31.9
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.5e-53 215.3 595 33.4
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.6e-50 204.5 684 30.1
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 2.4e-48 198.0 739 30.9
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.1e-47 194.9 487 38.0
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 6.0e-47 193.4 219 48.9
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-46 192.2 629 31.2
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 3.0e-46 191.0 447 37.6
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.3e-45 187.2 703 32.0
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 6.2e-44 183.3 702 32.2
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.1e-43 182.6 343 36.4
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 9.0e-43 179.5 459 37.5
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.2e-42 179.1 756 28.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.0e-42 178.3 881 26.4
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.3e-41 175.6 680 29.0
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 2.9e-41 174.5 676 29.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.3e-40 169.5 693 28.3
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-38 166.0 824 27.5
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.3e-38 165.6 336 39.6
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.0e-34 151.8 198 49.5
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.9e-32 145.2 576 29.5
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 2.3e-30 138.3 253 38.3
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.1e-30 137.1 487 30.2
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.1e-30 137.1 155 46.5
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 6.3e-28 130.2 799 24.5
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 6.9e-27 126.7 201 44.3
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 4.5e-26 124.0 387 31.8
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.5e-24 117.1 708 27.0
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.3e-22 111.7 396 31.8
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 5.1e-22 110.5 396 32.6
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 5.1e-22 110.5 155 40.6
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.7e-20 105.5 175 39.4
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 3.7e-20 104.4 393 30.3
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 4.1e-19 100.9 341 30.2
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.5e-18 99.0 657 24.4
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.3e-17 95.9 317 30.6
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 3.2e-16 91.3 187 37.4
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.1e-15 87.0 136 44.9
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 5.1e-14 84.0 82 58.5
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 8.8e-14 83.2 85 50.6
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.1e-13 82.8 64 64.1
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.0e-13 82.0 196 34.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.3e-13 81.3 234 30.3
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 4.8e-12 77.4 317 27.4
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 6.3e-12 77.0 136 38.2
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 3.1e-11 74.7 62 56.5
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 2.6e-10 71.6 229 36.2
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.5e-10 71.2 87 46.0
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.9e-10 70.5 87 46.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.7e-09 68.9 87 43.7
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 2.2e-09 68.6 76 50.0
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 2.9e-09 68.2 82 41.5
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.8e-09 67.8 282 28.7
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 1.6e-07 62.4 127 36.2


User provided reference genes

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