Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.2e-69 266.9 194 100.0
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 4.0e-49 198.7 191 83.2
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.2e-49 198.4 191 83.8
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.8e-49 198.0 191 83.8
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 3.4e-48 195.7 194 80.9
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 9.8e-48 194.1 194 82.0
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.9e-47 192.6 192 81.2
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 8.3e-47 191.0 194 79.9
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 8.3e-47 191.0 194 80.9
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 8.3e-47 191.0 190 82.6
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.4e-46 190.3 194 80.9
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.4e-46 190.3 194 80.4
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.8e-46 189.9 194 80.4
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.4e-46 189.5 194 81.4
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.4e-46 189.5 194 81.4
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 2.4e-46 189.5 193 80.8
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.4e-46 189.5 193 80.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 3.2e-46 189.1 193 80.3
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 4.1e-46 188.7 194 78.9
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 7.0e-46 188.0 194 80.9
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 9.2e-46 187.6 193 79.8
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.6e-45 186.8 194 80.4
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.6e-45 186.8 194 79.4
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.6e-45 186.8 192 80.2
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 4.6e-45 185.3 194 80.4
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 5.9e-45 184.9 194 78.4
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.0e-44 184.1 192 78.6
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.3e-44 183.7 194 77.8
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.3e-44 183.7 194 76.8
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.7e-44 183.3 192 78.6
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.7e-44 183.3 194 78.4
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.7e-44 183.3 187 80.7
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.9e-44 182.2 191 79.6
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 5.0e-44 181.8 191 78.5
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 6.6e-44 181.4 192 79.7
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 6.6e-44 181.4 189 77.8
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 8.6e-44 181.0 193 77.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 8.6e-44 181.0 193 78.8
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.9e-43 179.9 194 76.3
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.9e-43 179.9 194 77.3
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.9e-43 179.9 193 78.2
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.3e-43 179.1 194 76.8
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.3e-43 179.1 193 76.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.3e-43 179.1 193 77.2
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.3e-43 179.1 192 77.6
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.3e-43 178.7 192 79.2
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 5.6e-43 178.3 192 78.6
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.1e-42 176.4 194 77.8
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 2.8e-42 176.0 194 76.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 2.8e-42 176.0 191 75.9
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.6e-42 175.6 194 77.3
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.6e-42 175.6 194 74.7
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.7e-42 175.3 194 77.8
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 6.2e-42 174.9 191 66.5
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.0e-42 174.5 194 75.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.4e-41 173.7 194 77.3
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 5.2e-41 171.8 191 76.4
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 5.2e-41 171.8 193 75.6
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.6e-40 169.5 194 75.8
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 7.5e-40 167.9 191 75.4
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 9.8e-40 167.5 193 74.6
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.2e-39 166.4 193 71.0
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 2.9e-39 166.0 193 75.1
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.7e-39 165.6 194 72.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 6.4e-39 164.9 191 67.0
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 8.3e-39 164.5 191 72.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.1e-38 164.1 192 67.7
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.4e-38 163.7 192 74.5
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 2.4e-38 162.9 191 72.8
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.2e-38 162.5 215 46.0
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.0e-37 159.8 192 72.4
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.0e-37 159.8 236 64.4
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.7e-37 159.5 188 70.7
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 6.0e-37 158.3 194 73.2
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 7.8e-37 157.9 192 60.9
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 5.0e-36 155.2 194 72.2
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 8.6e-36 154.5 193 71.5
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.5e-35 152.9 193 71.5
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 7.3e-35 151.4 193 69.9
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 7.3e-35 151.4 193 69.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 9.5e-35 151.0 194 68.6
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.6e-34 150.2 193 70.5
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 2.1e-34 149.8 191 69.6
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.1e-34 149.8 191 69.1
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.8e-34 149.4 190 71.1
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 2.8e-34 149.4 193 69.9
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.6e-34 149.1 193 70.5
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 4.7e-34 148.7 193 69.9
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 8.1e-34 147.9 191 70.2
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 8.1e-34 147.9 191 70.7
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.9e-33 144.4 191 69.1
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 8.3e-31 137.9 160 80.0
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.1e-30 134.8 218 38.1
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 9.2e-30 134.4 160 80.6
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.2e-29 134.0 197 66.0
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.0e-28 131.0 175 72.0
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.3e-28 130.6 164 65.9
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.7e-28 130.2 166 60.8
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.3e-28 129.8 191 66.5
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 6.6e-28 128.3 74 81.1
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 4.3e-27 125.6 164 73.2
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.4e-25 120.6 162 72.2
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.4e-25 120.6 188 65.4
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.4e-25 120.6 71 78.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-25 120.6 74 75.7
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.8e-25 120.2 74 74.3
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 4.0e-25 119.0 194 61.3
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.5e-24 117.1 266 50.8
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.5e-24 117.1 74 73.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 4.4e-24 115.5 75 72.0
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.8e-24 115.2 165 72.1
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.7e-23 113.6 142 83.1
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.1e-22 110.9 187 62.0
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.2e-22 109.4 73 69.9
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 4.6e-21 105.5 225 34.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 5.1e-20 102.1 188 61.7
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 8.6e-20 101.3 73 64.4
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.3e-19 99.4 143 77.6
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 8.1e-18 94.7 74 56.8
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 8.1e-18 94.7 149 61.1
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.8e-17 93.6 163 63.8
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 5.8e-16 88.6 146 39.0
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 5.4e-14 82.0 149 35.6
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-13 80.1 121 81.8
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 4.6e-13 79.0 70 54.3
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.9e-12 75.9 71 57.7
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.6e-11 71.2 41 75.6
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.1e-09 67.8 63 47.6
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-09 67.8 63 47.6
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-09 67.8 63 47.6
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.4e-09 66.6 63 47.6
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 3.1e-09 66.2 42 64.3
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.0e-09 65.9 60 55.0
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.5e-08 63.9 170 57.1
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 2.6e-08 63.2 53 54.7
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 4.5e-08 62.4 50 56.0
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 9.3e-06 54.7 59 42.4


User provided reference genes

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