Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.4e-60 236.1 118 100.0
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.9e-54 215.7 107 100.0
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.9e-49 199.1 118 83.1
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.0e-47 193.4 118 83.1
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.3e-47 193.0 118 81.4
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 3.0e-47 191.8 118 79.7
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 3.9e-47 191.4 118 80.5
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 8.6e-47 190.3 118 81.4
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.9e-46 189.1 118 79.7
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.3e-46 188.3 118 78.8
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 5.6e-46 187.6 118 79.7
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 7.3e-46 187.2 118 81.4
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.6e-45 186.0 118 77.1
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.6e-45 186.0 118 77.1
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.6e-45 186.0 118 80.5
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 3.6e-45 184.9 118 79.7
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 4.7e-45 184.5 118 79.7
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 8.1e-45 183.7 118 78.0
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.1e-44 183.3 112 82.1
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.1e-44 183.3 112 80.4
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.8e-44 182.6 118 75.4
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.8e-44 182.6 118 75.4
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 2.3e-44 182.2 111 82.0
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.0e-44 181.4 118 75.4
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 5.2e-44 181.0 118 79.7
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.2e-44 181.0 119 76.5
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 6.8e-44 180.6 112 78.6
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 8.9e-44 180.3 119 75.6
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 8.9e-44 180.3 112 79.5
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.2e-43 179.9 119 75.6
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.2e-43 179.9 118 76.3
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.5e-43 179.5 118 76.3
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.5e-43 179.5 119 76.5
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.5e-43 179.5 118 75.4
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.0e-43 179.1 118 73.7
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.0e-43 179.1 119 75.6
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.0e-43 179.1 119 75.6
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 2.6e-43 178.7 111 79.3
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 2.6e-43 178.7 118 74.6
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.4e-43 178.3 112 76.8
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 4.4e-43 177.9 119 76.5
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 5.8e-43 177.6 118 75.4
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 5.8e-43 177.6 118 76.3
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 7.5e-43 177.2 118 75.4
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 7.5e-43 177.2 104 85.6
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 7.5e-43 177.2 118 73.7
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 9.8e-43 176.8 110 80.0
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.3e-42 176.4 110 76.4
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 1.7e-42 176.0 119 74.8
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 2.2e-42 175.6 120 76.7
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.2e-42 175.6 119 74.8
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.7e-42 174.9 118 75.4
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.7e-42 174.9 118 74.6
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 6.4e-42 174.1 98 86.7
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 8.3e-42 173.7 118 72.0
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.1e-41 173.3 119 73.1
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.4e-41 172.9 118 72.0
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.4e-41 172.9 118 74.6
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.9e-41 172.6 118 74.6
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.4e-41 172.2 119 73.1
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 2.4e-41 172.2 110 78.2
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.4e-41 172.2 118 73.7
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 3.2e-41 171.8 119 68.9
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 3.2e-41 171.8 103 80.6
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 3.2e-41 171.8 98 84.7
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 4.1e-41 171.4 103 79.6
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 5.4e-41 171.0 120 73.3
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 7.1e-41 170.6 119 73.1
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 7.1e-41 170.6 119 73.1
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 7.1e-41 170.6 98 82.7
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 7.1e-41 170.6 101 80.2
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 7.1e-41 170.6 119 71.4
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.6e-40 169.5 108 72.2
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 2.1e-40 169.1 119 72.3
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 2.1e-40 169.1 119 70.6
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 2.1e-40 169.1 98 80.6
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.5e-40 168.3 119 70.6
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.5e-40 168.3 119 70.6
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.5e-40 168.3 119 70.6
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 3.5e-40 168.3 98 82.7
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 4.6e-40 167.9 98 83.7
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 6.0e-40 167.5 119 71.4
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 7.8e-40 167.2 119 69.7
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.0e-39 166.8 118 70.3
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 1.3e-39 166.4 98 80.6
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 2.3e-39 165.6 97 79.4
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 2.3e-39 165.6 119 71.4
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 2.3e-39 165.6 119 69.7
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 3.0e-39 165.2 95 84.2
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 5.1e-39 164.5 119 70.6
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.1e-39 164.5 94 79.8
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 6.6e-39 164.1 96 82.3
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 6.6e-39 164.1 97 80.4
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 6.6e-39 164.1 118 69.5
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.9e-38 162.5 98 79.6
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.9e-38 162.5 94 83.0
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.5e-38 162.2 96 78.1
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.5e-38 162.2 96 78.1
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.5e-38 162.2 96 81.2
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 3.3e-38 161.8 102 74.5
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 7.3e-38 160.6 94 80.9
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 9.5e-38 160.2 94 80.9
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 9.5e-38 160.2 94 80.9
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.2e-37 159.8 119 68.1
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.2e-37 157.5 95 78.9
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 6.2e-37 157.5 96 79.2
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 8.1e-37 157.1 93 79.6
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 8.1e-37 157.1 93 79.6
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 8.1e-37 157.1 106 72.6
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 8.1e-37 157.1 119 67.2
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.4e-36 156.4 96 78.1
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.3e-36 155.6 112 69.6
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 2.3e-36 155.6 95 80.0
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.1e-36 155.2 122 66.4
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 3.1e-36 155.2 161 55.9
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.0e-36 154.8 121 66.1
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 4.0e-36 154.8 114 68.4
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 4.0e-36 154.8 95 77.9
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.5e-35 152.9 95 76.8
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.0e-35 152.5 126 65.1
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.6e-35 152.1 114 67.5
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 3.4e-35 151.8 95 73.7
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 4.4e-35 151.4 114 67.5
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 4.4e-35 151.4 114 67.5
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.6e-35 150.6 99 74.7
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.9e-33 146.0 96 74.0
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 4.1e-33 144.8 99 76.8
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 4.1e-33 144.8 95 74.7
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.5e-32 141.7 97 70.1
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.3e-31 139.8 97 68.0
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.3e-31 139.8 96 70.8
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.6e-29 132.9 98 69.4
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.6e-29 131.7 97 68.0
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 2.4e-28 129.0 76 80.3
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 4.0e-28 128.3 73 86.3
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.3e-23 113.2 98 58.2
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 1.6e-21 106.3 99 50.5
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.8e-21 105.5 98 56.1
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 7.6e-19 97.4 112 46.4
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 3.2e-17 92.0 96 47.9
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 5.4e-17 91.3 73 60.3
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.0e-11 72.8 74 48.6


User provided reference genes

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