Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 2157.5 1134 100.0
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1781.5 1134 81.3
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1766.5 1134 80.4
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1765.0 1140 79.8
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1763.8 1141 80.3
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1763.0 1134 79.6
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1761.5 1134 79.5
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1758.0 1134 79.4
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1755.0 1135 79.2
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1752.3 1137 79.6
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1748.8 1136 79.2
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1748.8 1136 79.9
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1745.3 1134 79.4
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1737.6 1136 76.9
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1734.2 1140 78.6
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1726.1 1137 78.4
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1722.6 1145 77.9
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1719.9 1134 78.0
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1719.5 1134 77.2
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1718.0 1134 78.7
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1717.6 1136 78.0
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1716.8 1146 77.8
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1715.7 1137 78.5
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1714.5 1146 78.1
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1714.5 1140 78.0
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1712.2 1145 77.4
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1709.9 1140 77.3
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1708.0 1136 77.8
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1707.6 1134 77.4
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1707.2 1134 77.3
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1706.0 1139 76.9
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1704.5 1135 77.4
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1703.7 1136 76.8
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1703.0 1135 77.2
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1701.4 1135 77.9
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1700.6 1140 76.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1698.7 1134 76.9
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1698.7 1135 76.7
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1697.9 1139 76.6
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1697.9 1135 77.1
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1697.2 1135 76.8
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1695.2 1135 77.4
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1689.9 1134 76.7
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1686.0 1134 76.6
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1683.3 1134 76.0
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1676.0 1137 77.0
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1676.0 1136 76.0
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1676.0 1186 74.0
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1664.8 1104 77.1
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1659.8 1145 75.2
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1654.8 1136 75.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1652.9 1140 74.9
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1637.1 1137 74.5
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1633.2 1134 74.9
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1617.8 1139 73.3
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1613.6 1134 73.5
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1609.7 1134 73.1
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1599.3 1029 79.3
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1597.0 1136 72.3
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1593.9 1138 71.9
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1592.8 1140 72.6
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1587.8 1136 72.2
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1584.3 1139 70.9
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1583.5 1136 72.5
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1133 72.1
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1574.3 1136 72.3
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1571.2 1138 70.8
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1567.0 1133 72.0
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1137 71.6
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1563.9 1138 70.4
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1563.1 1106 73.8
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1558.5 1136 71.4
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1556.2 1138 70.0
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1546.2 1138 69.5
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1546.2 1138 69.5
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1544.3 1138 69.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1543.9 1144 70.5
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1543.9 1144 70.5
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1543.1 1138 69.9
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1541.6 1139 69.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1541.2 1139 70.0
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1540.4 1137 69.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1538.9 1011 79.7
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1538.9 1069 72.8
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1535.0 1138 69.2
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1533.5 1136 70.2
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1525.8 1138 69.2
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1520.8 1138 69.0
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1519.2 1138 68.6
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1505.3 1138 68.3
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1499.2 1138 67.8
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1498.4 1071 72.7
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1489.6 1069 70.8
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1483.0 922 80.7
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1481.8 1033 72.6
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1466.1 922 80.7
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1455.3 1139 67.7
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1398.3 1132 65.5
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1397.9 1155 64.2
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1375.9 1100 66.5
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1358.2 1130 62.8
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1342.8 1103 62.5
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1314.3 884 75.0
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1302.7 1117 59.8
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1298.5 894 73.0
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1217.6 831 76.3
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1141.3 938 63.4
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1137.5 800 74.1
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1090.1 1095 51.6
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1078.2 1088 50.4
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 4.4e-305 1051.6 670 80.1
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 6.3e-304 1047.7 760 69.6
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 2.7e-299 1032.3 1066 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 2.6e-297 1025.8 1079 49.8
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.1e-260 904.0 610 77.7
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 6.4e-248 861.7 938 52.8
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 6.7e-221 771.9 1120 42.8
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 6.0e-214 748.8 647 61.1
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 5.7e-164 582.8 423 73.0
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 3.6e-158 563.5 366 76.0
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 9.8e-148 528.9 432 66.4
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 7.1e-122 443.0 355 63.4
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 2.2e-107 394.8 318 66.7
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.3e-99 369.0 1239 27.8
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.5e-97 360.9 313 63.9
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.7e-91 342.0 1144 28.2
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 6.3e-86 323.6 336 59.5
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.8e-80 305.4 368 47.3
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 5.5e-74 283.9 333 51.1
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.4e-69 269.2 323 50.8
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 5.7e-39 167.5 155 67.1
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 1.4e-32 146.4 100 74.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.0e-32 144.8 202 39.1
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 4.6e-28 131.3 108 73.1
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 7.8e-28 130.6 86 77.9
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 5.6e-26 124.4 86 74.4
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 4.0e-24 118.2 72 73.6
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 6.8e-24 117.5 68 75.0
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 1.3e-06 60.1 45 73.3


User provided reference genes

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