Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 9.4e-118 426.8 204 100.0
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 8.3e-98 360.5 205 82.0
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 3.5e-96 355.1 205 81.5
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 6.0e-96 354.4 204 81.9
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 7.8e-96 354.0 209 78.5
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 7.8e-96 354.0 205 82.0
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 1.0e-95 353.6 202 83.2
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 1.7e-95 352.8 205 81.0
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.3e-95 352.4 205 80.0
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 3.9e-95 351.7 205 80.0
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 5.0e-95 351.3 205 80.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 8.6e-95 350.5 210 78.6
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.9e-94 349.4 207 80.7
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.9e-94 349.4 205 80.0
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.9e-94 349.4 205 80.0
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 1.9e-94 349.4 207 81.2
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 5.6e-94 347.8 207 79.2
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 5.6e-94 347.8 205 79.5
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 9.5e-94 347.1 208 78.8
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.6e-93 346.3 203 79.8
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.6e-93 346.3 205 80.0
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 2.8e-93 345.5 204 79.4
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 3.6e-93 345.1 210 77.6
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 4.7e-93 344.7 205 79.5
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 8.1e-93 344.0 207 78.3
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.1e-92 343.6 204 80.4
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.4e-92 343.2 207 77.8
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.4e-92 343.2 207 76.8
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.8e-92 342.8 199 79.9
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.8e-92 342.8 204 78.9
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 2.3e-92 342.4 197 82.2
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 3.1e-92 342.0 204 78.4
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 3.1e-92 342.0 204 78.4
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 5.2e-92 341.3 203 77.8
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 8.9e-92 340.5 204 77.9
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 8.9e-92 340.5 205 78.0
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.2e-91 340.1 205 79.5
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 1.2e-91 340.1 204 78.4
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 2.0e-91 339.3 205 78.0
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 3.4e-91 338.6 207 78.7
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 7.5e-91 337.4 205 77.6
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 7.5e-91 337.4 205 79.0
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 9.8e-91 337.0 205 77.1
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 1.3e-90 336.7 207 76.3
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.3e-90 336.7 199 79.4
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.7e-90 336.3 217 76.0
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 2.2e-90 335.9 206 78.2
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 2.2e-90 335.9 205 76.6
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 2.2e-90 335.9 200 79.5
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 2.9e-90 335.5 209 75.6
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 6.4e-90 334.3 203 77.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 8.3e-90 334.0 206 75.2
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 8.3e-90 334.0 196 80.6
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 8.3e-90 334.0 204 77.0
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 2.4e-89 332.4 205 76.6
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 3.2e-89 332.0 201 77.6
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 4.1e-89 331.6 207 75.4
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 5.4e-89 331.3 203 76.8
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 7.1e-89 330.9 209 74.2
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 9.2e-89 330.5 196 80.6
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 9.2e-89 330.5 207 75.8
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.2e-88 330.1 200 79.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 2.7e-88 328.9 200 78.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 3.5e-88 328.6 205 77.6
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 4.6e-88 328.2 196 79.6
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 6.0e-88 327.8 198 77.8
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 1.0e-87 327.0 200 78.5
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.3e-87 326.6 201 77.1
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 1.3e-87 326.6 206 78.2
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 3.0e-87 325.5 198 77.3
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 3.0e-87 325.5 202 76.7
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 5.1e-87 324.7 204 75.5
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 5.1e-87 324.7 205 74.6
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 5.1e-87 324.7 204 77.0
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 6.6e-87 324.3 196 79.6
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 8.6e-87 323.9 202 75.7
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 8.6e-87 323.9 199 77.9
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 8.6e-87 323.9 203 74.9
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 8.6e-87 323.9 197 77.2
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 1.1e-86 323.6 200 79.0
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.3e-86 322.0 199 76.9
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 5.6e-86 321.2 198 76.8
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 9.5e-86 320.5 230 68.7
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 1.2e-85 320.1 198 77.8
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.6e-85 319.7 202 77.2
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.6e-85 319.7 199 74.9
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 2.1e-85 319.3 199 75.9
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.8e-85 318.9 205 75.6
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 3.6e-85 318.5 199 76.4
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 6.2e-85 317.8 201 74.6
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 8.1e-85 317.4 201 76.1
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 8.1e-85 317.4 200 76.5
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 2.3e-84 315.8 193 76.2
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.4e-81 306.6 199 73.4
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 5.4e-81 304.7 202 72.3
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 5.4e-81 304.7 202 72.3
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 5.4e-81 304.7 199 72.9
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.5e-80 302.0 199 72.4
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.3e-79 299.3 183 77.6
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 6.2e-77 291.2 170 79.4
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 6.4e-74 281.2 200 71.0
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 9.3e-73 277.3 197 67.0
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 5.1e-71 271.6 197 66.0
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 1.3e-69 266.9 165 77.0
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 4.8e-69 265.0 197 63.5
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 2.4e-68 262.7 162 74.7
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 4.9e-66 255.0 197 59.4
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.4e-65 252.7 204 62.3
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.4e-65 252.7 204 62.3
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 5.4e-65 251.5 200 59.5
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 3.0e-63 245.7 150 78.0
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 2.5e-62 242.7 193 60.6
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.4e-60 236.1 160 68.1
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 3.4e-59 232.3 197 56.3
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 9.9e-59 230.7 194 59.3
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.1e-56 223.0 134 78.4
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 4.6e-56 221.9 144 74.3
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 1.4e-49 200.3 124 73.4
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.0e-47 194.1 144 69.4
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 5.1e-47 191.8 144 68.8
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 7.4e-46 188.0 119 71.4
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.6e-45 186.8 119 71.4
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.8e-44 183.3 160 59.4
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.7e-42 176.8 97 80.4
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 2.4e-36 156.4 162 50.0
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 4.2e-33 145.6 100 70.0
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 2.7e-32 142.9 201 42.3
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 6.7e-31 138.3 75 90.7
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 2.2e-29 133.3 75 84.0
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 3.7e-29 132.5 206 42.7
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.9e-25 120.2 75 80.0
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.9e-23 112.5 100 58.0
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 3.3e-22 109.4 62 82.3
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 6.3e-13 78.6 37 94.6
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 1.6e-08 63.9 37 78.4
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 2.1e-08 63.5 41 70.7
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 4.7e-08 62.4 40 72.5
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 2.3e-07 60.1 36 77.8


User provided reference genes

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