Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 8.3e-174 613.6 309 100.0
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 6.2e-105 384.8 294 68.4
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 1.4e-104 383.6 298 65.8
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 2.6e-103 379.4 289 67.8
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 3.4e-103 379.0 289 67.8
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 2.2e-102 376.3 296 65.9
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 4.2e-101 372.1 289 66.8
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 2.1e-100 369.8 306 61.4
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 3.5e-100 369.0 308 61.0
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 1.3e-97 360.5 294 65.3
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 2.1e-97 359.8 315 59.4
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 5.5e-93 345.1 290 64.5
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 1.2e-92 344.0 311 61.1
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 1.3e-91 340.5 304 59.2
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 3.9e-91 339.0 281 61.9
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 6.7e-91 338.2 272 62.9
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 8.7e-91 337.8 279 61.6
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 3.7e-89 332.4 268 65.7
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 8.2e-89 331.3 308 59.1
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 4.1e-88 328.9 230 70.9
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 4.1e-88 328.9 326 55.5
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 9.0e-88 327.8 327 56.3
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 1.2e-87 327.4 342 55.0
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 4.5e-87 325.5 283 60.8
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 7.7e-87 324.7 259 63.3
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 2.2e-86 323.2 306 58.5
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 2.2e-86 323.2 234 67.1
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 2.9e-86 322.8 339 54.6
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 5.0e-86 322.0 238 67.2
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 5.0e-86 322.0 293 58.0
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 5.0e-86 322.0 335 53.7
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 1.4e-85 320.5 281 61.2
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 1.4e-85 320.5 278 60.1
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.6e-84 317.0 233 67.8
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 2.7e-84 316.2 306 56.2
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 2.7e-84 316.2 284 62.0
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 4.6e-84 315.5 306 56.5
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 4.6e-84 315.5 284 58.5
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 1.4e-83 313.9 335 54.0
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 3.0e-83 312.8 305 55.4
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 3.0e-83 312.8 308 57.8
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 3.0e-83 312.8 295 56.6
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 3.9e-83 312.4 315 54.0
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 5.1e-83 312.0 279 61.6
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 8.8e-83 311.2 281 57.3
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 1.1e-82 310.8 264 62.9
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 2.5e-82 309.7 243 62.6
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 2.5e-82 309.7 285 59.6
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 1.3e-81 307.4 257 58.4
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 2.2e-81 306.6 260 61.9
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 2.8e-81 306.2 238 64.3
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 2.8e-81 306.2 233 64.8
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.8e-81 306.2 306 56.2
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 2.8e-81 306.2 308 54.2
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 4.8e-81 305.4 242 62.4
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 4.8e-81 305.4 303 55.1
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 4.8e-81 305.4 249 61.8
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 6.3e-81 305.1 260 58.8
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 8.2e-81 304.7 316 53.8
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.1e-80 304.3 291 57.7
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 2.4e-80 303.1 290 53.8
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 3.1e-80 302.8 242 62.4
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 3.1e-80 302.8 293 55.6
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 4.1e-80 302.4 247 63.6
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 5.3e-80 302.0 241 63.5
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 5.3e-80 302.0 241 63.5
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 6.9e-80 301.6 274 56.2
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 6.9e-80 301.6 238 61.8
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 6.9e-80 301.6 246 61.8
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 1.2e-79 300.8 252 63.9
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 1.5e-79 300.4 315 51.4
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 2.0e-79 300.1 257 59.1
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 2.6e-79 299.7 227 65.2
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.0e-78 297.7 288 55.9
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 2.2e-78 296.6 223 65.0
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 2.2e-78 296.6 298 54.0
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 3.8e-78 295.8 302 54.6
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 5.0e-78 295.4 240 62.5
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 2.5e-77 293.1 310 51.9
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 3.2e-77 292.7 299 54.8
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 5.5e-77 292.0 339 51.0
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 9.4e-77 291.2 315 52.4
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 1.6e-76 290.4 237 61.6
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 6.1e-76 288.5 247 60.3
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.0e-75 287.7 302 55.3
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.4e-75 287.3 332 50.9
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 1.4e-75 287.3 256 60.5
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 1.4e-75 287.3 298 54.4
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 2.0e-74 283.5 216 64.4
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 2.0e-74 283.5 216 64.4
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 2.0e-74 283.5 191 71.7
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 3.3e-74 282.7 327 49.5
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 3.3e-74 282.7 261 57.1
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 1.4e-72 277.3 254 57.9
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.4e-72 277.3 275 54.9
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 2.1e-68 263.5 293 51.9
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 4.7e-68 262.3 262 52.7
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 1.4e-67 260.8 196 67.9
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 1.8e-67 260.4 325 48.3
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 5.2e-67 258.8 243 54.3
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 9.7e-66 254.6 272 51.1
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 6.1e-60 235.3 193 60.6
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 1.4e-59 234.2 229 55.5
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.8e-59 233.8 291 49.5
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 8.3e-57 224.9 141 77.3
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 5.4e-56 222.2 178 61.8
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 5.9e-55 218.8 142 76.1
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 1.0e-54 218.0 235 51.9
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 2.1e-52 210.3 207 52.7
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 4.3e-45 186.0 247 44.1
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 1.6e-44 184.1 207 48.3
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 3.0e-43 179.9 167 55.7
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 5.2e-43 179.1 291 41.2
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 5.7e-42 175.6 201 52.2
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 2.8e-36 156.8 216 44.0
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 2.8e-36 156.8 216 44.0
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 1.0e-35 154.8 320 35.0
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 8.9e-35 151.8 223 40.8
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 2.3e-30 137.1 90 76.7
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 1.6e-28 131.0 195 37.9
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 3.1e-27 126.7 89 69.7
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 4.6e-23 112.8 211 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 6.6e-22 109.0 179 41.3
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 6.2e-12 75.9 74 55.4
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 1.1e-08 65.1 122 31.1


User provided reference genes

Program Settings