Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.8e-100 368.6 189 100.0
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.8e-78 296.2 189 79.4
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.1e-75 287.0 186 77.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.0e-74 282.7 189 76.7
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.7e-74 282.3 189 76.2
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.0e-73 280.4 187 73.3
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.0e-73 280.4 189 72.5
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.0e-73 280.4 189 72.5
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.3e-73 279.3 189 75.1
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.6e-73 277.7 182 77.5
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.1e-72 276.9 190 74.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.5e-72 275.8 182 76.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.3e-72 275.4 189 75.1
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.3e-72 275.0 189 76.7
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 5.6e-72 274.6 182 76.9
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 7.3e-72 274.2 180 75.6
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 7.3e-72 274.2 188 75.5
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 7.3e-72 274.2 182 76.9
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 9.5e-72 273.9 188 74.5
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.2e-71 273.5 189 73.5
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.7e-71 271.6 185 75.7
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 8.0e-71 270.8 182 75.8
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 5.2e-70 268.1 175 74.3
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 8.9e-70 267.3 189 72.5
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.2e-69 266.9 186 73.7
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.5e-69 266.5 185 73.5
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.0e-69 266.2 184 71.7
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 4.4e-69 265.0 184 72.3
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 7.5e-69 264.2 183 73.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.7e-68 263.1 182 72.0
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.2e-68 262.7 192 72.4
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.9e-68 262.3 184 70.7
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 6.4e-68 261.2 192 69.3
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 6.4e-68 261.2 189 72.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.4e-67 260.0 217 65.0
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.4e-67 260.0 187 71.1
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.4e-67 259.2 189 69.8
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 3.2e-67 258.8 183 69.4
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 4.1e-67 258.5 183 69.4
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 5.4e-67 258.1 184 70.1
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.6e-66 256.5 189 70.4
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.7e-66 255.8 168 78.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.7e-66 255.8 184 71.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-65 253.8 182 72.5
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.0e-65 253.8 180 72.2
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.3e-65 253.4 189 68.3
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-65 252.3 173 72.3
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.0e-65 252.3 194 67.0
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 3.9e-65 251.9 181 70.7
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.9e-65 251.9 184 73.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 5.0e-65 251.5 182 69.8
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.1e-64 250.4 185 68.6
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.6e-63 246.5 180 69.4
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.8e-63 245.7 182 69.8
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 6.2e-63 244.6 173 71.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 8.0e-63 244.2 189 67.2
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.3e-62 242.7 178 69.7
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 3.4e-61 238.8 189 63.5
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.4e-61 238.4 184 66.8
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.8e-61 238.0 182 68.7
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 5.8e-61 238.0 189 63.5
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.8e-61 237.3 184 65.8
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.3e-60 236.9 184 64.7
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.7e-60 235.3 175 70.3
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.7e-60 235.3 184 64.7
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 4.9e-60 235.0 184 63.6
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 4.1e-59 231.9 248 54.0
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 4.1e-59 231.9 182 62.6
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 7.0e-59 231.1 139 80.6
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-58 229.6 173 69.9
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 3.5e-58 228.8 183 65.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.0e-57 227.3 181 64.6
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 3.0e-57 225.7 140 82.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 6.6e-57 224.6 181 65.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 8.6e-57 224.2 170 68.2
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.3e-56 222.2 195 64.6
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 9.5e-56 220.7 136 80.1
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 8.9e-54 214.2 178 61.8
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.5e-53 213.4 140 76.4
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.7e-52 209.9 200 59.5
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 6.4e-52 208.0 136 77.9
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.4e-51 206.1 176 58.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 3.5e-50 202.2 173 61.3
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 3.5e-50 202.2 122 81.1
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.0e-49 200.7 182 57.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.3e-49 200.3 176 59.1
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.3e-49 199.5 176 59.1
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 3.9e-49 198.7 151 66.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.1e-49 198.4 180 55.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 7.3e-48 194.5 118 83.9
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.8e-46 189.9 166 57.2
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 4.4e-45 185.3 113 78.8
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 7.6e-45 184.5 178 55.1
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 2.9e-44 182.6 158 60.8
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 4.9e-44 181.8 179 54.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 1.4e-43 180.3 175 53.1
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.4e-43 179.5 175 53.7
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-42 177.2 179 52.5
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.6e-42 176.8 175 52.6
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.1e-42 176.4 175 53.1
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.1e-42 176.4 179 53.1
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 3.5e-42 175.6 128 68.0
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 3.0e-41 172.6 180 52.2
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-40 170.6 179 52.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.3e-40 169.1 180 51.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-39 167.2 181 48.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.2e-39 167.2 181 48.1
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.2e-39 167.2 128 68.8
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 3.6e-39 165.6 182 47.8
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 6.9e-38 161.4 143 58.7
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 9.0e-38 161.0 146 56.8
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.2e-37 160.6 129 65.9
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.5e-37 160.2 161 55.9
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.6e-37 159.5 168 51.2
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 2.6e-37 159.5 172 50.6
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 4.9e-36 155.2 132 68.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.2e-35 152.5 185 44.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.3e-33 147.1 191 41.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-33 146.4 127 61.4
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 8.7e-33 144.4 118 60.2
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 5.6e-32 141.7 128 56.2
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.8e-31 139.4 187 42.8
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.8e-30 136.7 181 41.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.8e-30 136.7 173 43.9
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 6.9e-30 134.8 180 41.7
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 9.0e-30 134.4 180 41.7
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 2.6e-29 132.9 180 41.1
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 3.4e-29 132.5 182 40.1
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.4e-29 132.5 85 74.1
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 5.8e-29 131.7 143 49.0
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 3.2e-27 125.9 90 75.6
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-26 123.2 146 45.2
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.5e-26 122.5 187 39.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.3e-25 120.6 182 37.4
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.6e-23 113.6 183 36.6
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.3e-20 104.0 73 76.7
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.7e-20 103.6 57 89.5
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.9e-20 102.1 57 89.5
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.5e-19 99.8 57 87.7
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 4.2e-19 99.0 57 86.0
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 3.5e-18 95.9 121 44.6
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 4.6e-18 95.5 174 33.3
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 4.6e-18 95.5 63 74.6
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-16 90.5 57 78.9
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.5e-16 89.7 177 34.5
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.4e-13 79.3 83 49.4
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.9e-12 76.3 41 90.2
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.2e-11 72.8 87 44.8
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 8.7e-09 64.7 40 70.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 6.9e-06 55.1 66 42.4


User provided reference genes

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