Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 6.4e-162 575.1 612 100.0
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 2.6e-86 323.9 620 79.8
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 8.3e-85 318.9 624 78.8
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 4.1e-84 316.6 614 79.5
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 2.0e-83 314.3 614 79.2
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 3.5e-83 313.5 619 79.6
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 2.3e-82 310.8 615 79.0
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 3.0e-82 310.5 616 78.6
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 3.3e-81 307.0 584 81.3
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 3.6e-80 303.5 615 77.9
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.7e-80 303.1 612 79.4
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.7e-80 303.1 612 79.4
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 2.9e-77 293.9 616 77.4
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 1.1e-76 292.0 618 77.3
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 7.1e-76 289.3 615 77.9
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 2.1e-75 287.7 615 77.2
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 2.1e-75 287.7 616 77.6
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 2.7e-75 287.3 576 79.5
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 7.8e-75 285.8 562 82.4
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 3.3e-73 280.4 594 78.8
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 7.3e-73 279.3 584 80.1
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.1e-72 277.7 584 80.0
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 1.4e-71 275.0 624 75.6
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 5.2e-71 273.1 618 76.4
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 6.8e-71 272.7 623 73.2
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 8.9e-71 272.3 615 75.3
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 1.2e-70 271.9 618 75.6
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 1.2e-70 271.9 555 81.3
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 2.0e-70 271.2 623 73.2
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 2.0e-70 271.2 631 74.5
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 7.6e-70 269.2 543 81.0
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.8e-69 266.9 626 74.0
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 4.1e-68 263.5 613 75.4
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 9.2e-68 262.3 664 71.5
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 2.1e-67 261.2 627 75.3
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.1e-67 261.2 584 78.8
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 3.5e-67 260.4 556 61.0
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 4.6e-67 260.0 618 73.0
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 1.0e-66 258.8 615 75.0
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 1.0e-66 258.8 653 62.5
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 2.5e-65 254.2 560 80.2
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 5.6e-65 253.1 614 74.9
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 5.6e-65 253.1 615 74.8
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.8e-64 250.8 617 69.9
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 6.2e-64 249.6 572 78.5
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 8.1e-64 249.2 613 74.9
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.1e-63 248.8 616 75.6
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 3.1e-63 247.3 645 69.0
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 1.2e-62 245.4 609 74.5
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.2e-62 245.4 572 78.3
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.5e-62 245.0 619 64.3
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 4.4e-62 243.4 610 74.8
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 7.6e-62 242.7 584 66.8
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 1.3e-61 241.9 623 73.2
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 1.7e-61 241.5 614 74.3
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 4.9e-61 240.0 623 72.9
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 1.4e-60 238.4 568 78.2
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 1.4e-60 238.4 561 79.0
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 2.4e-60 237.7 552 79.3
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 2.4e-60 237.7 594 75.4
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 7.1e-60 236.1 575 77.9
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 7.1e-60 236.1 614 73.8
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 7.1e-60 236.1 243 57.6
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 6.6e-58 229.6 544 79.0
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 1.5e-57 228.4 615 64.7
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 2.1e-56 224.6 564 77.7
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 2.8e-56 224.2 611 73.3
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 3.6e-56 223.8 552 78.8
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.6e-56 223.8 415 68.9
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 9.0e-55 219.2 611 73.5
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 2.0e-54 218.0 184 62.5
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 3.4e-54 217.2 343 78.1
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 4.5e-54 216.9 610 73.6
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 9.9e-54 215.7 610 73.4
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 9.9e-54 215.7 610 73.4
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 4.9e-53 213.4 610 73.1
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 4.9e-53 213.4 610 73.1
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 4.9e-53 213.4 611 72.3
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 6.4e-53 213.0 236 54.2
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 4.2e-52 210.3 552 77.9
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 4.2e-52 210.3 212 57.5
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 5.4e-52 209.9 599 61.1
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 5.4e-52 209.9 235 53.6
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 7.1e-52 209.5 615 72.2
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.2e-51 208.8 236 53.4
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.6e-51 208.4 236 53.4
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 2.1e-51 208.0 233 52.8
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 2.7e-51 207.6 563 76.2
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 6.0e-51 206.5 471 88.5
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.0e-50 205.7 259 50.6
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 1.3e-50 205.3 177 63.3
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 1.3e-50 205.3 164 65.2
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 6.7e-50 203.0 200 59.0
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 1.1e-49 202.2 178 57.3
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 6.2e-48 196.4 547 74.2
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 5.8e-46 189.9 501 80.6
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 8.4e-45 186.0 263 47.1
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 1.9e-44 184.9 548 75.5
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 1.8e-42 178.3 489 81.8
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 1.9e-41 174.9 569 73.3
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 2.5e-41 174.5 158 58.9
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 4.3e-41 173.7 548 71.5
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 2.8e-40 171.0 158 58.2
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 1.1e-39 169.1 123 64.2
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 4.0e-39 167.2 179 53.6
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 4.0e-39 167.2 588 70.4
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 1.2e-38 165.6 219 48.9
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-37 162.2 185 54.6
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-37 162.2 185 54.6
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 1.1e-33 149.1 197 50.8
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 5.7e-33 146.7 120 62.5
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 4.5e-30 137.1 242 41.3
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 7.2e-28 129.8 586 68.6
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.7e-27 127.9 243 89.7
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 7.7e-22 109.8 209 39.7
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.4e-18 99.0 234 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 1.8e-18 98.6 360 62.5
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.8e-18 98.6 405 65.2
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 2.8e-16 91.3 63 65.1
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 7.0e-15 86.7 569 65.7
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 7.0e-15 86.7 569 65.7
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 7.7e-14 83.2 220 32.7
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 3.2e-12 77.8 595 63.5
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 1.8e-10 72.0 243 76.5
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 2.6e-09 68.2 242 77.7
SGA_v2.0_scaffold68G22967 Striga asiatica HOM05D006250 ORTHO05D007107 1.4e-07 62.4 120 40.0


User provided reference genes

Program Settings