Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 4.6e-39 164.1 82 100.0
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 3.3e-21 104.8 81 64.2
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.4e-19 99.4 79 64.6
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 9.0e-19 96.7 77 61.0
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 6.5e-17 90.5 83 55.4
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 8.4e-17 90.1 73 58.9
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 8.4e-17 90.1 84 58.3
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.1e-16 89.7 83 55.4
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.5e-16 88.6 84 61.9
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.5e-16 88.6 84 61.9
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.5e-16 88.6 84 61.9
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.2e-16 87.8 84 61.9
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 4.2e-16 87.8 81 58.0
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.2e-15 86.3 89 55.1
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 3.5e-15 84.7 82 58.5
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 3.5e-15 84.7 82 58.5
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 4.6e-15 84.3 84 58.3
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 7.9e-15 83.6 81 55.6
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 7.9e-15 83.6 81 55.6
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.3e-14 82.8 80 56.2
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 1.8e-14 82.4 82 56.1
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.8e-14 82.4 84 52.4
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 2.3e-14 82.0 86 52.3
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 3.0e-14 81.6 82 53.7
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.9e-14 81.3 90 52.2
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 3.9e-14 81.3 73 58.9
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 8.7e-14 80.1 78 55.1
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 8.7e-14 80.1 73 57.5
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.1e-13 79.7 81 53.1
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.9e-13 79.0 83 51.8
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.9e-13 79.0 84 52.4
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 3.3e-13 78.2 79 51.9
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.7e-13 77.4 70 58.6
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 7.4e-13 77.0 77 53.2
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 9.6e-13 76.6 82 51.2
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.3e-12 76.3 84 52.4
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.6e-12 75.9 81 54.3
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 1.6e-12 75.9 81 53.1
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.1e-12 75.5 84 52.4
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 2.1e-12 75.5 84 52.4
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 2.8e-12 75.1 84 48.8
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 2.8e-12 75.1 77 51.9
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.8e-12 75.1 79 54.4
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 4.8e-12 74.3 85 50.6
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 4.8e-12 74.3 80 47.5
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 6.2e-12 73.9 73 52.1
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 6.2e-12 73.9 84 48.8
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 8.2e-12 73.6 84 53.6
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.4e-11 72.8 75 54.7
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.8e-11 72.4 83 54.2
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 1.8e-11 72.4 77 53.2
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.8e-11 72.4 82 51.2
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.8e-11 72.4 73 53.4
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.8e-11 72.4 84 52.4
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.4e-11 72.0 83 49.4
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.4e-11 72.0 83 49.4
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 2.4e-11 72.0 83 51.8
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 2.4e-11 72.0 74 51.4
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.1e-11 71.6 81 49.4
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 3.1e-11 71.6 79 50.6
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.0e-11 71.2 83 51.8
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 4.0e-11 71.2 83 47.0
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 5.3e-11 70.9 89 48.3
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.9e-11 70.5 83 50.6
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 6.9e-11 70.5 73 49.3
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 6.9e-11 70.5 74 54.1
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 6.9e-11 70.5 83 49.4
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.0e-11 70.1 83 51.8
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 9.0e-11 70.1 83 48.2
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 2.0e-10 68.9 74 51.4
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.6e-10 68.6 82 50.0
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.6e-10 68.6 80 50.0
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.6e-10 68.6 74 51.4
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.5e-10 67.8 84 46.4
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 4.5e-10 67.8 84 46.4
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 4.5e-10 67.8 76 50.0
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.5e-10 67.8 89 43.8
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 4.5e-10 67.8 83 49.4
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 4.5e-10 67.8 72 51.4
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 5.8e-10 67.4 75 52.0
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.8e-10 67.4 81 51.9
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 5.8e-10 67.4 82 47.6
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 5.8e-10 67.4 82 46.3
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.0e-09 66.6 91 47.3
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.3e-09 66.2 75 53.3
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.7e-09 65.9 83 42.2
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.9e-09 65.1 74 47.3
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.9e-09 65.1 78 46.2
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.9e-09 65.1 83 49.4
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 2.9e-09 65.1 78 50.0
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 5.0e-09 64.3 74 47.3
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 5.0e-09 64.3 84 46.4
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.0e-09 64.3 83 49.4
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 6.5e-09 63.9 83 50.6
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 8.4e-09 63.5 79 50.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.1e-08 63.2 76 44.7
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.1e-08 63.2 81 49.4
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.1e-08 63.2 74 43.2
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.1e-08 63.2 82 45.1
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 1.1e-08 63.2 85 44.7
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.4e-08 62.8 74 52.7
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 1.4e-08 62.8 78 48.7
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 2.5e-08 62.0 77 49.4
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.5e-08 62.0 81 43.2
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 3.2e-08 61.6 79 43.0
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 3.2e-08 61.6 74 44.6
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.2e-08 61.6 89 47.2
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 3.2e-08 61.6 83 48.2
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.2e-08 61.6 82 43.9
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.2e-08 61.2 85 45.9
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 5.5e-08 60.8 83 42.2
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.5e-08 60.8 75 45.3
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 5.5e-08 60.8 82 45.1
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 7.1e-08 60.5 74 44.6
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 7.1e-08 60.5 79 48.1
Rhsim08G0167800 Rhododendron simsii HOM05D003533 ORTHO05D004009 7.1e-08 60.5 77 48.1
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.2e-07 59.7 82 42.7
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 1.2e-07 59.7 81 44.4
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 1.2e-07 59.7 83 47.0
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 1.2e-07 59.7 80 47.5
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.7e-07 58.5 76 44.7
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 2.7e-07 58.5 86 44.2
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.7e-07 58.5 77 46.8
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 3.5e-07 58.2 81 40.7
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 6.1e-07 57.4 76 42.1
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 6.1e-07 57.4 76 42.1
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 7.9e-07 57.0 78 44.9
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 7.9e-07 57.0 78 46.2
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.9e-07 57.0 75 49.3
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.0e-06 56.6 80 37.5
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.0e-06 56.6 79 39.2
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.0e-06 56.6 73 46.6
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.3e-06 56.2 73 43.8
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 1.3e-06 56.2 75 42.7
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.8e-06 55.8 74 45.9
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 1.8e-06 55.8 70 45.7
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.8e-06 55.8 87 41.4
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.3e-06 55.5 83 39.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 3.0e-06 55.1 81 38.3
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 3.0e-06 55.1 81 38.3
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 3.0e-06 55.1 73 42.5
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 3.9e-06 54.7 71 42.3
EL10Ac5g10833 Beta vulgaris HOM05D003533 ORTHO05D004009 3.9e-06 54.7 69 44.9
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 3.9e-06 54.7 70 41.4
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 5.1e-06 54.3 81 37.0
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 5.1e-06 54.3 83 38.6
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.1e-06 54.3 90 36.7
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.7e-06 53.9 77 46.8


User provided reference genes

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