Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 8.0e-123 443.7 219 100.0
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 2.3e-61 239.6 208 61.5
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 3.1e-58 229.2 180 63.9
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 1.5e-57 226.9 191 59.7
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.0e-57 226.5 184 62.0
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 2.6e-57 226.1 208 58.2
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 7.6e-57 224.6 222 54.1
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.2e-56 223.0 178 62.4
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 8.5e-56 221.1 215 57.2
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 1.1e-55 220.7 208 56.7
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 3.2e-55 219.2 178 61.8
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 1.6e-54 216.9 178 62.4
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 2.7e-54 216.1 191 60.7
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 6.1e-54 214.9 210 55.7
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 7.9e-54 214.5 202 56.4
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 1.0e-53 214.2 210 54.3
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 5.1e-53 211.8 214 54.7
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 8.7e-53 211.1 211 55.0
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 1.5e-52 210.3 210 54.3
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 1.5e-52 210.3 197 56.9
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 2.5e-52 209.5 214 53.7
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 4.3e-52 208.8 178 59.0
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 5.7e-52 208.4 214 53.7
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 5.7e-52 208.4 206 54.4
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 2.2e-51 206.5 178 59.0
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 2.8e-51 206.1 176 58.0
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 2.8e-51 206.1 207 55.1
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.4e-50 203.8 184 56.0
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.4e-50 203.8 177 58.2
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 5.3e-50 201.8 176 58.5
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.5e-49 200.3 223 53.8
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 1.5e-49 200.3 178 59.6
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 2.0e-49 199.9 193 54.9
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 3.4e-49 199.1 212 50.9
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 3.4e-49 199.1 224 51.8
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 1.0e-48 197.6 205 52.7
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 1.0e-48 197.6 173 59.0
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 1.0e-48 197.6 215 51.2
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.0e-48 197.6 215 51.2
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.3e-48 197.2 224 51.8
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 1.3e-48 197.2 199 52.3
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 1.7e-48 196.8 176 58.5
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 2.2e-48 196.4 220 50.0
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 6.5e-48 194.9 173 58.4
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 6.5e-48 194.9 211 49.8
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 6.5e-48 194.9 176 55.7
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.2e-47 192.6 188 54.8
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 4.2e-47 192.2 209 50.7
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 4.2e-47 192.2 178 57.3
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 7.2e-47 191.4 215 51.2
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 7.2e-47 191.4 218 50.0
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.1e-46 189.9 176 55.1
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 3.6e-46 189.1 174 56.3
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 3.6e-46 189.1 198 52.5
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 7.9e-46 188.0 176 55.7
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 7.9e-46 188.0 206 47.6
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 1.8e-45 186.8 187 52.4
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 2.3e-45 186.4 227 47.6
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 8.8e-45 184.5 176 55.7
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 1.5e-44 183.7 221 46.6
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 2.0e-44 183.3 178 54.5
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 3.3e-44 182.6 182 52.2
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 4.4e-44 182.2 187 52.9
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 4.4e-44 182.2 213 48.8
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 5.7e-44 181.8 208 49.0
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 1.7e-43 180.3 213 47.4
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 3.7e-43 179.1 204 49.5
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 3.7e-43 179.1 175 56.6
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 1.1e-42 177.6 221 44.3
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 3.4e-41 172.6 284 39.4
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 4.5e-41 172.2 172 53.5
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 5.9e-41 171.8 184 52.2
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 2.2e-40 169.9 170 50.6
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 2.9e-40 169.5 177 48.0
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 5.0e-40 168.7 205 46.3
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 8.5e-40 167.9 220 42.7
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 1.1e-39 167.5 213 47.4
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 2.5e-39 166.4 180 48.3
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 2.1e-38 163.3 148 55.4
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 6.1e-38 161.8 213 42.3
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 7.9e-38 161.4 139 59.0
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 1.5e-36 157.1 193 47.2
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.5e-36 157.1 179 50.3
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 2.0e-36 156.8 211 42.2
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 4.4e-36 155.6 173 48.6
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 1.3e-35 154.1 134 56.0
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 2.2e-35 153.3 169 48.5
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 2.8e-35 152.9 181 47.5
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 6.3e-35 151.8 186 47.8
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 6.3e-35 151.8 178 45.5
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 8.2e-35 151.4 145 60.0
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 8.2e-35 151.4 179 46.9
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 1.6e-33 147.1 172 47.7
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 3.2e-31 139.4 208 41.3
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 1.4e-29 134.0 173 43.9
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 3.0e-29 132.9 209 37.3
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 6.7e-29 131.7 150 51.3
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 4.4e-28 129.0 193 43.0
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 2.8e-27 126.3 171 38.0
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 6.3e-27 125.2 143 44.1
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 5.3e-26 122.1 204 39.7
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.0e-24 117.9 140 47.9
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 1.4e-21 107.5 102 55.9
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 2.9e-16 89.7 145 35.2
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 7.2e-15 85.1 164 32.3
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 1.2e-12 77.8 65 53.8
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 1.2e-12 77.8 65 53.8
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.0e-12 77.0 74 54.1
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 6.3e-11 72.0 118 35.6
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.3e-08 64.3 143 34.3
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 2.5e-07 60.1 84 41.7
CARHR292590 Cardamine hirsuta HOM05D007009 ORTHO05D008451 6.1e-06 55.5 41 63.4


User provided reference genes

Program Settings