Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 2.5e-52 208.4 98 100.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 7.4e-20 100.5 95 53.7
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 4.8e-19 97.8 96 52.1
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 5.3e-18 94.4 98 50.0
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.0e-17 92.4 95 52.6
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.7e-16 89.4 98 45.9
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 1.7e-16 89.4 97 50.5
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 6.5e-16 87.4 88 50.0
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 8.5e-16 87.0 99 46.5
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.2e-15 85.1 94 45.7
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 4.2e-15 84.7 100 47.0
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 5.5e-15 84.3 97 47.4
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 9.4e-15 83.6 90 55.6
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 9.4e-15 83.6 96 45.8
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.1e-14 82.4 91 48.4
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.6e-14 81.6 89 50.6
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 4.7e-14 81.3 95 46.3
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 4.7e-14 81.3 100 47.0
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 6.1e-14 80.9 87 48.3
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.1e-14 80.9 97 47.4
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 8.0e-14 80.5 90 47.8
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 1.0e-13 80.1 98 50.0
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 1.0e-13 80.1 87 48.3
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 1.8e-13 79.3 85 49.4
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.0e-13 78.6 93 48.4
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 3.0e-13 78.6 92 52.2
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 4.0e-13 78.2 90 50.0
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 5.2e-13 77.8 84 46.4
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 6.8e-13 77.4 87 48.3
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 1.2e-12 76.6 99 40.4
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.2e-12 76.6 98 44.9
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.2e-12 76.6 98 46.9
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.2e-12 76.6 108 46.3
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 2.0e-12 75.9 98 45.9
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 2.0e-12 75.9 93 46.2
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 2.6e-12 75.5 93 47.3
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.4e-12 75.1 98 44.9
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 3.4e-12 75.1 87 50.6
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 5.7e-12 74.3 114 41.2
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 5.7e-12 74.3 96 45.8
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 7.5e-12 73.9 98 42.9
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 7.5e-12 73.9 82 48.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 7.5e-12 73.9 85 47.1
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 1.3e-11 73.2 88 48.9
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.3e-11 73.2 92 47.8
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 1.3e-11 73.2 86 46.5
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 1.3e-11 73.2 99 43.4
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 1.3e-11 73.2 95 44.2
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 1.7e-11 72.8 67 53.7
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.7e-11 72.8 53 62.3
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.7e-11 72.8 74 48.6
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 2.2e-11 72.4 85 45.9
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 2.2e-11 72.4 105 45.7
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 2.8e-11 72.0 100 43.0
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 2.8e-11 72.0 85 45.9
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.8e-11 72.0 109 45.9
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 6.3e-11 70.9 93 47.3
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 8.3e-11 70.5 83 44.6
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.1e-10 70.1 99 40.4
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.1e-10 70.1 90 43.3
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 1.4e-10 69.7 112 42.0
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.4e-10 69.7 93 43.0
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.4e-10 69.7 102 40.2
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-10 69.7 63 55.6
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.4e-10 69.7 87 48.3
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 1.4e-10 69.7 108 43.5
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.8e-10 69.3 50 60.0
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.8e-10 69.3 100 46.0
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 1.8e-10 69.3 78 44.9
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 1.8e-10 69.3 90 42.2
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 1.8e-10 69.3 91 41.8
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 2.4e-10 68.9 77 51.9
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 2.4e-10 68.9 100 46.0
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.4e-10 68.9 50 64.0
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.4e-10 68.9 84 45.2
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.4e-10 68.9 84 45.2
Thhalv10019352m.g Eutrema salsugineum HOM05D010176 ORTHO05D012455 4.1e-10 68.2 101 40.6
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.1e-10 68.2 63 54.0
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 4.1e-10 68.2 108 40.7
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 5.4e-10 67.8 99 39.4
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.0e-10 67.4 100 45.0
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 7.0e-10 67.4 87 48.3
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 7.0e-10 67.4 87 47.1
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 9.1e-10 67.0 63 52.4
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 9.1e-10 67.0 90 41.1
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 9.1e-10 67.0 96 42.7
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 9.1e-10 67.0 94 41.5
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.2e-09 66.6 101 45.5
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.2e-09 66.6 99 43.4
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 1.2e-09 66.6 94 40.4
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.6e-09 66.2 84 45.2
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 1.6e-09 66.2 90 41.1
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 2.0e-09 65.9 91 41.8
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 2.0e-09 65.9 97 39.2
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.7e-09 65.5 100 44.0
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 2.7e-09 65.5 86 44.2
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 3.5e-09 65.1 49 65.3
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.5e-09 65.1 99 39.4
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 3.5e-09 65.1 88 45.5
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 3.5e-09 65.1 97 35.1
CARHR063070 Cardamine hirsuta HOM05D010176 ORTHO05D012455 4.5e-09 64.7 99 40.4
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.5e-09 64.7 63 52.4
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 4.5e-09 64.7 84 44.0
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 5.9e-09 64.3 99 38.4
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 7.7e-09 63.9 88 43.2
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 7.7e-09 63.9 95 45.3
A02p16280 Brassica napus HOM05D010176 ORTHO05D012455 1.0e-08 63.5 98 39.8
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 1.0e-08 63.5 88 45.5
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.7e-08 62.8 45 62.2
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 1.7e-08 62.8 87 40.2
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 2.9e-08 62.0 51 60.8
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 2.9e-08 62.0 95 40.0
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 3.8e-08 61.6 89 43.8
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 5.0e-08 61.2 33 81.8
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 5.0e-08 61.2 93 40.9
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 6.5e-08 60.8 105 41.0
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 6.5e-08 60.8 93 39.8
BcaC08g46447 Brassica carinata HOM05D010176 ORTHO05D012455 8.5e-08 60.5 92 41.3
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 8.5e-08 60.5 97 39.2
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 8.5e-08 60.5 38 68.4
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 8.5e-08 60.5 38 68.4
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 1.1e-07 60.1 109 36.7
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 1.1e-07 60.1 90 38.9
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 1.5e-07 59.7 83 42.2
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 1.9e-07 59.3 80 46.2
BcaC03g15148 Brassica carinata HOM05D010176 ORTHO05D012455 2.5e-07 58.9 98 38.8
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 2.5e-07 58.9 113 35.4
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 2.5e-07 58.9 84 41.7
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 2.5e-07 58.9 84 40.5
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 2.5e-07 58.9 94 41.5
AL2G29210 Arabidopsis lyrata HOM05D010176 ORTHO05D012455 3.2e-07 58.5 99 40.4
A07p36420 Brassica napus HOM05D010176 ORTHO05D012455 3.2e-07 58.5 92 40.2
Oeu011717.2 Olea europaea HOM05D004965 ORTHO05D004401 3.2e-07 58.5 74 40.5
Peaxi162Scf00059g00123 Petunia axillaris HOM05D028751 ORTHO05D030265 3.2e-07 58.5 78 38.5
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 4.2e-07 58.2 101 38.6
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 4.2e-07 58.2 87 40.2
Solyc01g011105.1 Solanum lycopersicum HOM05D004965 ORTHO05D004401 4.2e-07 58.2 71 43.7
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 5.5e-07 57.8 77 46.8
Carub.0002s1667 Capsella rubella HOM05D010176 ORTHO05D012455 5.5e-07 57.8 67 52.2
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 7.2e-07 57.4 74 48.6
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 7.2e-07 57.4 82 41.5
BcaB03g15521 Brassica carinata HOM05D010176 ORTHO05D012455 9.4e-07 57.0 96 40.6
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 9.4e-07 57.0 77 45.5
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 1.2e-06 56.6 98 34.7
BcaB03g14774 Brassica carinata HOM05D010176 ORTHO05D012455 1.6e-06 56.2 92 38.0
Aa31LG2G4620 Aethionema arabicum HOM05D009946 ORTHO05D004401 2.1e-06 55.8 79 44.3
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 2.1e-06 55.8 85 41.2
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 2.1e-06 55.8 30 80.0
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.1e-06 55.8 69 44.9
TWI36G1686 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.7e-06 55.5 114 31.6
TWI75G1371 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.7e-06 55.5 101 36.6
BcaB05g24507 Brassica carinata HOM05D010176 ORTHO05D012455 3.6e-06 55.1 100 39.0
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 3.6e-06 55.1 29 82.8
Sc10g0004060 Simmondsia chinensis HOM05D004965 ORTHO05D004401 6.1e-06 54.3 105 34.3


User provided reference genes

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