Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.3e-276 955.7 468 100.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 4.3e-251 870.9 439 97.3
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 5.6e-198 694.5 468 71.8
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.2e-197 693.3 468 70.7
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 3.6e-197 691.8 468 71.2
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 3.6e-197 691.8 465 71.6
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 6.2e-197 691.0 466 71.5
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.2e-197 691.0 466 72.3
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.3e-196 689.1 467 71.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.2e-195 686.8 466 71.2
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.7e-194 682.9 468 69.9
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 4.9e-194 681.4 469 69.9
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.1e-193 680.2 469 70.4
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.6e-192 676.4 468 70.7
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.7e-191 672.9 472 68.9
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 3.0e-191 672.2 462 71.2
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.6e-191 671.0 463 70.2
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.5e-190 669.8 467 67.9
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 2.8e-189 665.6 472 68.9
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.4e-187 658.7 462 68.0
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 7.5e-187 657.5 465 69.5
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.7e-186 655.2 465 68.8
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 4.9e-186 654.8 468 68.4
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 8.3e-186 654.1 465 66.9
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 3.2e-185 652.1 464 68.1
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 7.1e-185 651.0 466 67.8
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.6e-184 648.3 440 70.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 1.0e-183 647.1 465 67.5
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.3e-183 646.7 463 67.0
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 5.6e-182 641.3 466 67.8
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 2.8e-181 639.0 469 66.5
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.0e-179 632.9 420 71.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 5.8e-179 631.3 468 65.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 7.6e-179 630.9 465 65.2
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.2e-178 629.4 465 64.9
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.9e-178 629.0 465 64.9
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.4e-178 627.5 465 64.9
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.1e-177 627.1 470 65.5
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.9e-177 626.3 467 64.9
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.2e-176 623.6 469 65.7
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.3e-175 620.2 463 65.2
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 5.1e-175 618.2 464 64.4
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.6e-175 617.8 465 64.1
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.5e-174 616.7 452 66.8
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.5e-174 616.7 485 63.5
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 4.8e-173 611.7 467 64.0
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 8.1e-173 610.9 468 65.2
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.1e-172 610.5 464 64.7
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.1e-172 610.5 469 64.8
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.1e-172 610.5 465 65.4
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 1.8e-172 609.8 465 65.4
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 6.9e-172 607.8 472 63.3
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 9.0e-172 607.4 466 64.6
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.2e-171 607.1 452 64.4
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 5.8e-171 604.7 465 65.4
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.7e-170 603.2 439 68.1
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 3.2e-169 599.0 466 63.1
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.2e-168 597.0 466 62.2
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 2.1e-168 596.3 417 69.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 5.1e-167 591.7 463 62.0
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.5e-166 590.1 464 61.2
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 3.3e-166 589.0 465 60.9
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 4.3e-166 588.6 464 62.9
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 5.6e-166 588.2 465 61.9
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.3e-164 581.6 465 60.2
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 7.6e-163 577.8 459 61.0
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.1e-161 573.9 459 61.2
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.4e-161 573.5 460 61.1
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.2e-161 572.4 464 60.8
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 3.5e-160 568.9 463 60.9
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-159 567.4 455 61.5
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.3e-159 567.0 437 65.2
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 3.0e-159 565.8 460 59.8
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 8.7e-159 564.3 459 60.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-157 560.5 460 59.3
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 2.8e-157 559.3 460 59.3
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-156 557.0 455 61.1
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 5.3e-156 555.1 455 60.7
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-155 551.2 455 60.2
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 7.6e-155 551.2 455 60.2
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 7.6e-155 551.2 466 58.4
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.0e-154 550.8 457 60.6
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-154 549.7 459 59.3
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.2e-154 549.7 466 57.5
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.9e-154 549.3 465 58.3
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.8e-154 548.9 461 59.9
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 6.4e-154 548.1 459 58.8
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 8.4e-154 547.7 458 58.3
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-153 547.4 466 57.7
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-153 547.0 455 59.8
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.2e-152 543.9 464 57.3
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.1e-152 543.1 466 57.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 3.5e-152 542.3 486 59.1
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 2.3e-151 539.7 464 56.5
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 4.8e-149 531.9 442 58.4
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 4.8e-149 531.9 438 59.6
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.8e-148 530.0 442 58.6
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.3e-148 528.5 457 58.2
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-147 526.9 438 58.4
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.3e-143 513.8 346 73.1
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.8e-143 513.5 508 52.8
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-142 510.8 492 53.9
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 4.3e-142 508.8 435 58.2
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 4.3e-142 508.8 460 56.3
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.7e-142 508.4 459 57.1
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.8e-141 506.1 455 53.8
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.1e-140 504.2 466 55.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 9.0e-140 501.1 469 53.9
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.6e-139 499.6 494 52.6
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 5.0e-138 495.4 437 55.4
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.7e-136 489.6 464 55.8
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 3.0e-135 486.1 424 58.0
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-134 483.0 443 55.8
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 7.4e-134 481.5 464 53.9
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 8.2e-133 478.0 461 53.1
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.9e-129 466.8 459 55.1
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.6e-128 463.8 351 63.5
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 7.4e-126 454.9 388 58.0
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 6.5e-122 441.8 364 58.2
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 6.1e-120 435.3 444 53.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.2e-112 411.0 499 44.7
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 6.6e-98 362.1 459 42.5
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 6.0e-83 312.4 255 62.4
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.3e-82 311.2 405 41.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 6.4e-77 292.4 432 39.1
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.5e-73 281.2 200 69.0
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 5.6e-73 279.3 200 68.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 7.3e-73 278.9 190 71.6
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.4e-70 270.0 265 50.6
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.4e-69 265.8 196 64.3
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 7.8e-59 232.3 225 54.2
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 4.2e-52 209.9 145 66.9
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-50 203.4 379 35.9
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 5.6e-49 199.5 225 49.3
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-46 190.3 222 47.7
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-41 175.3 315 37.1
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.2e-37 161.0 83 95.2
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 4.2e-36 156.8 151 53.6
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 3.0e-34 150.6 110 62.7
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 9.6e-33 145.6 178 46.6
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 7.6e-30 136.0 116 61.2
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.9e-29 134.0 81 77.8
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.0e-26 125.6 71 76.1
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.0e-26 124.0 115 56.5
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 3.0e-26 124.0 132 49.2
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 5.1e-26 123.2 213 38.5
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 6.3e-24 116.3 91 64.8
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.6e-22 110.9 91 63.7
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 4.5e-22 110.2 132 49.2
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-21 107.5 144 41.7
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-21 107.1 144 41.7
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 4.6e-19 100.1 76 56.6
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 6.1e-19 99.8 120 45.8
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-18 99.0 76 56.6
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 3.3e-17 94.0 109 47.7
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 7.4e-17 92.8 98 51.0
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 9.7e-17 92.4 135 45.2
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 3.7e-16 90.5 56 73.2
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 4.8e-16 90.1 100 54.0
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 6.3e-16 89.7 73 53.4
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 8.2e-16 89.4 54 64.8
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 3.1e-15 87.4 116 42.2
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.9e-12 78.2 177 29.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.5e-12 77.8 56 60.7
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.2e-12 76.3 202 26.7
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 1.2e-11 75.5 68 51.5
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.0e-10 72.4 177 27.7
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-10 71.6 53 58.5
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.7e-08 65.1 53 50.9
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.4e-07 62.0 80 37.5
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.3e-07 60.1 72 38.9
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 7.0e-07 59.7 51 51.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.0e-07 59.7 93 34.4
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 7.7e-06 56.2 40 57.5
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.7e-06 56.2 176 25.0


User provided reference genes

Program Settings