Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 4.9e-120 434.5 221 100.0
MSTRG.13399 Avicennia marina HOM05D007453 ORTHO05D009223 8.5e-64 247.7 220 62.3
PGSC0003DMG400017639 Solanum tuberosum HOM05D007453 ORTHO05D009223 7.5e-60 234.6 221 59.3
Nitab4.5_0000679g0070 Nicotiana tabacum HOM05D007453 ORTHO05D009223 1.7e-59 233.4 231 58.4
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 1.1e-58 230.7 221 59.3
Solyc05g006960.3 Solanum lycopersicum HOM05D007453 ORTHO05D009223 3.1e-58 229.2 221 58.4
Sopen05g002920 Solanum pennellii HOM05D007453 ORTHO05D009223 3.1e-58 229.2 221 58.4
MSTRG.2362 Avicennia marina HOM05D007453 ORTHO05D009223 2.5e-55 219.5 223 59.2
Migut.E00119 Erythranthe guttata HOM05D007453 ORTHO05D009223 1.2e-54 217.2 226 58.0
SalBow8G2121 Salvia bowleyana HOM05D007453 ORTHO05D009223 4.7e-54 215.3 223 56.5
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 1.4e-53 213.8 221 54.8
HanXRQChr17g0544601 Helianthus annuus HOM05D007453 ORTHO05D009223 1.2e-52 210.7 221 54.8
SGA_v2.0_scaffold87G26973 Striga asiatica HOM05D007453 ORTHO05D009223 1.5e-52 210.3 226 57.5
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 4.4e-52 208.8 224 55.4
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 7.5e-52 208.0 221 55.2
DCAR_031058 Daucus carota HOM05D007453 ORTHO05D009223 9.8e-52 207.6 222 57.2
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 4.8e-51 205.3 228 55.3
Nitab4.5_0002969g0020 Nicotiana tabacum HOM05D007453 ORTHO05D009223 1.4e-50 203.8 230 53.9
Lsat_1_v5_gn_3_49860 Lactuca sativa HOM05D007453 ORTHO05D009223 2.0e-49 199.9 203 58.1
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 3.8e-48 195.7 221 51.6
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 5.0e-48 195.3 224 51.8
Cfa009043 Carpinus fangiana HOM05D007453 ORTHO05D009223 6.5e-48 194.9 222 53.6
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 1.1e-47 194.1 224 52.7
Actinidia19855 Actinidia chinensis HOM05D007453 ORTHO05D009223 1.5e-47 193.7 221 52.0
unitig_62.g23683 Utricularia gibba HOM05D007453 ORTHO05D009223 5.5e-47 191.8 220 50.9
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 9.5e-47 191.0 222 52.3
CiPaw.05G140500 Carya illinoinensis HOM05D007453 ORTHO05D009223 2.7e-46 189.5 228 49.6
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 2.7e-46 189.5 221 52.5
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 4.7e-46 188.7 221 53.4
Rhsim12G0129600 Rhododendron simsii HOM05D007453 ORTHO05D009223 1.8e-45 186.8 274 45.3
Duzib248G0401 Durio zibethinus HOM05D007453 ORTHO05D009223 6.8e-45 184.9 225 51.6
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 4.4e-44 182.2 221 52.0
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 9.8e-44 181.0 223 52.0
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 9.8e-44 181.0 224 50.9
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 9.8e-44 181.0 223 51.1
Peaxi162Scf00209g00516 Petunia axillaris HOM05D007453 ORTHO05D009223 1.7e-43 180.3 223 49.8
FAN07G0059 Fragaria x ananassa HOM05D007453 ORTHO05D009223 2.2e-43 179.9 225 49.3
Gorai.009G347100 Gossypium raimondii HOM05D007453 ORTHO05D009223 2.2e-43 179.9 221 49.8
Lalb_Chr10g0097941 Lupinus albus HOM05D007453 ORTHO05D009223 3.7e-43 179.1 221 48.9
Cpa.g.sc1379.2 Carica papaya HOM05D007453 ORTHO05D009223 1.4e-42 177.2 224 48.2
FAN22G0202 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.4e-42 177.2 225 49.3
Manes.05G095900 Manihot esculenta HOM05D007453 ORTHO05D009223 2.4e-42 176.4 221 49.3
Haze_12073 Corylus avellana HOM05D007453 ORTHO05D009223 3.1e-42 176.0 251 47.4
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 3.1e-42 176.0 223 48.9
FvH4_4g32080 Fragaria vesca HOM05D007453 ORTHO05D009223 4.1e-42 175.6 225 48.4
Lj2g0026857 Lotus japonicus HOM05D007453 ORTHO05D009223 9.2e-42 174.5 221 49.3
Thecc.02G232500 Theobroma cacao HOM05D007453 ORTHO05D009223 9.2e-42 174.5 225 49.8
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 1.2e-41 174.1 223 48.9
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 1.2e-41 174.1 226 50.4
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 1.6e-41 173.7 221 49.8
Duzib251G0796 Durio zibethinus HOM05D007453 ORTHO05D009223 3.5e-41 172.6 221 49.8
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 3.5e-41 172.6 221 49.3
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 1.3e-40 170.6 223 48.4
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 2.9e-40 169.5 175 54.9
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 2.9e-40 169.5 221 48.0
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 3.8e-40 169.1 175 54.3
CARHR024860 Cardamine hirsuta HOM05D007453 ORTHO05D009223 3.8e-40 169.1 223 44.8
Atru.chr11.1862 Acer truncatum HOM05D007453 ORTHO05D009223 1.1e-39 167.5 215 48.8
RcHm_v2.0_Chr4g0440771 Rosa chinensis HOM05D007453 ORTHO05D009223 1.1e-39 167.5 227 47.1
Thhalv10008803m.g Eutrema salsugineum HOM05D007453 ORTHO05D009223 1.9e-39 166.8 229 45.4
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 1.9e-39 166.8 221 48.9
AL1G38440 Arabidopsis lyrata HOM05D007453 ORTHO05D009223 3.3e-39 166.0 229 45.4
Hund05917 Selenicereus undatus HOM05D007453 ORTHO05D009223 5.6e-39 165.2 222 49.5
EL10Ac6g13141 Beta vulgaris HOM05D007453 ORTHO05D009223 7.3e-39 164.9 226 48.2
Duzib248G0483 Durio zibethinus HOM05D007453 ORTHO05D009223 9.5e-39 164.5 225 48.0
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 2.8e-38 162.9 226 46.9
Sp1g21730 Schrenkiella parvula HOM05D007453 ORTHO05D009223 1.0e-37 161.0 225 44.0
Gohir.A05G321200 Gossypium hirsutum HOM05D007453 ORTHO05D009223 1.4e-37 160.6 166 53.6
AT1G27050 Arabidopsis thaliana HOM05D007453 ORTHO05D009223 3.0e-37 159.5 224 44.2
BcaB03g14102 Brassica carinata HOM05D007453 ORTHO05D009223 3.0e-37 159.5 222 43.7
THA.LOC104822931 Tarenaya hassleriana HOM05D007453 ORTHO05D009223 6.8e-37 158.3 223 45.7
BcaC06g35095 Brassica carinata HOM05D007453 ORTHO05D009223 8.9e-37 157.9 221 43.0
GSVIVG01020080001 Vitis vinifera HOM05D007453 ORTHO05D009223 1.2e-36 157.5 224 48.7
C07p19880 Brassica napus HOM05D007453 ORTHO05D009223 3.4e-36 156.0 224 42.9
BolC7t42507H Brassica oleracea HOM05D007453 ORTHO05D009223 3.4e-36 156.0 224 42.9
ClCG05G024650 Citrullus lanatus HOM05D007453 ORTHO05D009223 3.4e-36 156.0 214 46.7
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 5.7e-36 155.2 225 43.6
Sed0013591 Sechium edule HOM05D007453 ORTHO05D009223 9.8e-36 154.5 229 46.7
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 2.2e-35 153.3 190 47.4
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 1.1e-34 151.0 238 43.3
Glyma.02G022351 Glycine max HOM05D007453 ORTHO05D009223 1.8e-34 150.2 166 51.2
FAN12G0628 Fragaria x ananassa HOM05D007453 ORTHO05D009223 2.0e-33 146.7 225 44.0
Sc11g0001650 Simmondsia chinensis HOM05D007453 ORTHO05D009223 5.9e-33 145.2 221 45.2
Carub.0001s2392 Capsella rubella HOM05D007453 ORTHO05D009223 1.0e-32 144.4 221 41.2
Dinv40682 Davidia involucrata HOM05D007453 ORTHO05D009223 1.0e-32 144.4 142 55.6
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 2.3e-32 143.3 221 44.3
CiPaw.06G080300 Carya illinoinensis HOM05D007453 ORTHO05D009223 3.9e-32 142.5 170 50.6
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 5.6e-31 138.7 229 41.9
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 2.8e-30 136.3 188 45.2
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 2.8e-30 136.3 229 41.5
Lj6C173T12 Lonicera japonica HOM05D007453 ORTHO05D009223 3.6e-30 136.0 119 62.2
BraA07t29098Z Brassica rapa HOM05D007453 ORTHO05D009223 2.0e-28 130.2 221 38.5
AUR62026455 Chenopodium quinoa HOM05D007453 ORTHO05D009223 4.4e-28 129.0 126 57.1
A07p13280 Brassica napus HOM05D007453 ORTHO05D009223 9.8e-28 127.9 221 38.5
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 1.6e-25 120.6 134 50.0
AUR62026264 Chenopodium quinoa HOM05D007453 ORTHO05D009223 7.8e-25 118.2 119 55.5
ATR0665G072 Amborella trichopoda HOM05D007453 ORTHO05D009223 3.0e-24 116.3 223 36.8
HPP92_001648 Vanilla planifolia HOM05D007453 ORTHO05D009223 2.1e-22 110.2 151 43.0
CDE05G3569 Ceratophyllum demersum HOM05D007453 ORTHO05D009223 4.7e-22 109.0 170 38.8
Lj6C173T11 Lonicera japonica HOM05D007453 ORTHO05D009223 2.3e-13 80.1 100 50.0
Nn4g23028 Nelumbo nucifera HOM05D007453 ORTHO05D009223 3.8e-11 72.8 126 42.1
HPP92_001630 Vanilla planifolia HOM05D007453 ORTHO05D009223 1.4e-10 70.9 96 40.6
A07p13630 Brassica napus HOM05D007453 ORTHO05D009223 7.1e-10 68.6 143 32.9
Pp3c14_1800 Physcomitrium patens HOM05D030917 ORTHO05D009223 1.6e-06 57.4 192 27.1


User provided reference genes

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