Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 2.2e-169 599.0 320 100.0
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 5.5e-112 408.3 321 68.8
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 2.6e-106 389.4 322 64.6
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 3.4e-106 389.0 331 65.0
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 4.9e-105 385.2 323 65.6
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 4.9e-105 385.2 327 64.8
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 4.9e-105 385.2 319 64.3
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.5e-104 382.9 332 64.5
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 7.1e-104 381.3 326 65.6
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 2.1e-103 379.8 321 64.8
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 2.7e-103 379.4 325 63.4
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 7.9e-103 377.9 317 66.6
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 6.7e-102 374.8 320 63.8
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 8.7e-102 374.4 321 65.1
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 2.5e-101 372.9 323 65.3
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 3.3e-101 372.5 318 66.4
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 3.3e-101 372.5 266 74.1
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 5.7e-101 371.7 313 64.9
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 5.7e-101 371.7 326 66.3
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 5.7e-101 371.7 325 64.9
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 7.4e-101 371.3 332 65.4
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 9.6e-101 370.9 322 63.4
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 1.3e-100 370.5 321 65.1
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 4.8e-100 368.6 326 64.1
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 4.8e-100 368.6 332 65.1
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 5.3e-99 365.2 265 73.2
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 5.3e-99 365.2 325 63.1
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 6.9e-99 364.8 307 65.8
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 9.0e-99 364.4 366 56.0
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.6e-98 362.8 326 63.8
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 4.5e-98 362.1 297 64.3
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 7.6e-98 361.3 325 60.6
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 7.6e-98 361.3 330 63.0
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 2.2e-97 359.8 324 60.5
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.9e-97 359.4 331 62.8
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 8.5e-97 357.8 266 70.3
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 1.1e-96 357.5 271 70.8
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.9e-96 356.7 271 70.1
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.5e-96 356.3 341 61.3
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 2.5e-96 356.3 330 58.8
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 1.2e-95 354.0 249 72.7
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 1.6e-95 353.6 313 61.7
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 2.7e-95 352.8 306 61.4
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 3.6e-95 352.4 300 64.3
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 3.6e-95 352.4 322 62.1
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 6.1e-95 351.7 277 65.0
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 7.9e-95 351.3 329 59.0
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 7.9e-95 351.3 321 61.7
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 3.0e-94 349.4 275 68.4
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 3.0e-94 349.4 266 68.8
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 3.0e-94 349.4 266 68.0
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 8.7e-94 347.8 312 60.6
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 1.1e-93 347.4 304 62.5
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 3.3e-93 345.9 307 62.2
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 1.3e-92 344.0 294 62.9
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 1.3e-92 344.0 323 61.6
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.6e-92 343.6 268 63.8
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 8.2e-92 341.3 305 60.3
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.4e-91 340.5 254 66.5
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 9.1e-91 337.8 334 58.1
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 2.0e-90 336.7 305 61.6
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 3.4e-90 335.9 261 69.3
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 5.9e-90 335.1 324 57.4
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.0e-89 334.3 300 59.3
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 2.2e-89 333.2 208 81.7
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 2.9e-89 332.8 292 64.0
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 6.5e-89 331.6 317 57.1
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 8.5e-89 331.3 314 58.3
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 8.5e-89 331.3 310 59.4
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 8.5e-89 331.3 239 71.5
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 1.9e-88 330.1 325 59.1
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 1.9e-88 330.1 314 58.0
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 4.2e-88 328.9 312 58.3
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 7.2e-88 328.2 305 60.7
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 2.1e-87 326.6 305 57.7
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 2.7e-87 326.2 313 58.8
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 2.7e-87 326.2 303 59.4
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 2.7e-87 326.2 310 58.7
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 4.6e-87 325.5 287 59.6
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 1.4e-86 323.9 224 71.0
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 3.0e-86 322.8 244 68.4
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 8.8e-86 321.2 261 67.0
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 1.1e-85 320.9 340 54.7
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 4.4e-85 318.9 224 71.4
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 4.4e-85 318.9 224 71.4
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 5.7e-85 318.5 310 58.7
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 5.7e-85 318.5 277 64.6
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 7.4e-85 318.2 300 58.7
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 2.2e-84 316.6 247 66.8
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 2.2e-84 316.6 197 79.2
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 2.8e-84 316.2 252 65.5
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 8.2e-84 314.7 247 66.0
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.8e-83 313.5 203 78.8
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.2e-82 310.8 334 53.6
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 2.6e-82 309.7 243 65.8
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 1.3e-81 307.4 226 70.8
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 6.5e-81 305.1 198 76.8
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 4.2e-80 302.4 267 59.6
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 7.2e-80 301.6 199 78.9
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 3.9e-78 295.8 290 55.2
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 2.0e-77 293.5 214 68.7
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 1.1e-75 287.7 203 71.4
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 7.0e-75 285.0 295 55.3
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 5.5e-72 275.4 199 74.4
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.1e-64 251.1 215 57.7
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 1.6e-58 230.7 200 57.5
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 1.6e-58 230.7 250 50.0
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 9.5e-56 221.5 200 54.0
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 1.6e-55 220.7 205 53.2
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.0e-53 213.8 159 67.9
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.2e-50 204.5 220 49.1
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 2.5e-48 196.8 150 64.7
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 1.8e-38 164.1 191 51.8
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 4.4e-29 132.9 178 42.7
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 1.7e-28 131.0 180 50.0
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.2e-28 130.6 111 59.5
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.5e-21 107.8 73 76.7
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 2.6e-21 107.1 73 76.7
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 1.7e-09 67.8 58 67.2


User provided reference genes

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