Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 0.0e+00 1651.3 866 100.0
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.6e-299 1031.6 871 64.4
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 7.2e-284 980.7 877 61.1
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 2.3e-282 975.7 878 60.9
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 3.7e-280 968.4 895 58.8
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.0e-273 946.0 868 59.8
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 3.4e-273 945.3 872 60.7
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 3.4e-273 945.3 872 61.2
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 3.8e-269 931.8 871 59.8
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.9e-268 929.5 843 59.4
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 5.5e-268 927.9 867 59.2
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.2e-267 926.8 876 58.9
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.1e-263 913.7 884 58.1
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.4e-263 913.3 870 59.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.4e-263 911.4 844 59.0
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 8.6e-261 904.0 788 61.9
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 8.6e-261 904.0 871 58.3
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.9e-260 902.9 860 58.4
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 4.3e-260 901.7 854 58.9
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 9.5e-260 900.6 854 58.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 2.8e-259 899.0 973 54.3
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 4.7e-259 898.3 879 55.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 6.1e-259 897.9 869 57.2
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 8.9e-258 894.0 951 55.1
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.6e-257 892.5 952 55.0
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 7.5e-257 891.0 754 65.0
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.2e-256 889.4 873 56.2
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 6.4e-256 887.9 870 56.8
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.8e-255 886.3 870 57.6
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 4.6e-254 881.7 875 56.2
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 5.9e-254 881.3 859 57.7
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.0e-253 878.2 870 56.4
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.5e-252 876.7 880 56.4
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.9e-252 876.3 838 59.1
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.9e-252 876.3 868 56.9
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 7.3e-252 874.4 872 56.8
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.6e-251 873.2 835 58.1
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.2e-251 871.3 834 57.8
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.0e-250 870.5 906 54.2
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 3.1e-250 869.0 835 58.4
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 9.8e-249 864.0 835 57.6
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 4.9e-248 861.7 838 58.4
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 6.4e-248 861.3 872 56.4
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.9e-247 859.8 884 55.1
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.1e-247 858.6 840 57.6
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.0e-246 856.3 876 56.3
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.5e-246 855.5 844 57.0
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.5e-246 855.5 1032 50.7
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 6.0e-246 854.7 721 65.3
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.0e-245 854.0 835 57.1
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.7e-245 853.2 869 54.5
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.9e-244 849.7 847 56.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 5.6e-244 848.2 840 57.3
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 7.3e-244 847.8 837 57.7
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.2e-243 847.0 890 55.2
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.2e-243 847.0 871 55.9
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.1e-243 846.3 839 56.9
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 6.2e-243 844.7 877 55.8
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 6.2e-243 844.7 839 56.6
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 8.1e-243 844.3 772 59.8
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.1e-242 844.0 877 54.0
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.2e-242 841.6 840 58.0
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 7.5e-241 837.8 889 53.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 1.7e-240 836.6 872 54.9
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 6.4e-240 834.7 874 53.9
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 6.0e-238 828.2 871 54.1
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 7.8e-238 827.8 872 53.2
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 2.3e-237 826.2 874 54.3
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 3.9e-237 825.5 871 55.1
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.5e-236 822.8 873 53.3
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.6e-235 820.1 843 54.2
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 3.6e-235 818.9 886 53.6
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.2e-233 813.9 837 55.3
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.5e-233 813.5 903 53.7
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 7.1e-231 804.7 842 54.8
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 8.6e-229 797.7 834 53.7
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 6.2e-227 791.6 848 54.2
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.8e-226 790.0 840 53.8
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 4.0e-226 788.9 750 59.9
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 6.9e-226 788.1 837 54.0
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.2e-225 787.3 844 53.6
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 1.2e-225 787.3 842 53.4
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 3.8e-224 782.3 845 53.4
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.2e-222 777.3 848 53.3
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 4.6e-222 775.4 875 52.2
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 9.6e-220 767.7 922 49.9
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 2.4e-218 763.1 829 53.0
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 4.0e-218 762.3 834 52.5
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.2e-217 760.8 817 54.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.2e-214 750.7 785 53.4
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 3.5e-214 749.2 880 51.7
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 4.6e-214 748.8 838 52.1
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 6.0e-214 748.4 877 51.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-211 740.3 841 51.7
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 2.8e-211 739.6 608 63.3
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 6.2e-211 738.4 882 50.7
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.1e-210 737.6 826 52.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.8e-210 736.9 790 53.7
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 2.4e-210 736.5 882 50.7
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 2.0e-209 733.4 834 51.9
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 4.5e-209 732.3 840 51.1
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 1.3e-208 730.7 873 50.9
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 4.9e-208 728.8 856 50.4
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.3e-204 716.1 729 54.6
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.1e-203 713.4 880 46.9
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.1e-202 711.1 852 50.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 6.9e-202 708.4 834 50.7
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.1e-196 691.0 814 51.5
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.9e-196 690.3 874 49.0
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 6.3e-195 685.3 729 53.8
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 2.2e-192 676.8 796 50.3
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.7e-190 669.8 790 50.4
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-189 667.2 746 53.1
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 3.3e-188 662.9 876 47.6
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.7e-187 660.6 863 46.2
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 2.8e-187 659.8 873 47.8
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 5.5e-183 645.6 874 46.8
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 3.6e-182 642.9 556 62.8
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 8.5e-176 621.7 797 46.0
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 6.1e-174 615.5 880 44.7
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.3e-171 607.8 916 42.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.2e-163 578.6 555 57.7
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.1e-159 568.2 836 43.3
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.1e-158 563.9 874 40.7
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 4.8e-155 552.7 836 42.7
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 2.0e-153 547.4 1100 36.5
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.7e-147 527.7 761 43.1
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 7.0e-146 522.3 748 43.2
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.0e-141 506.9 449 63.9
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 9.2e-138 495.4 548 53.6
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.2e-129 468.4 522 50.0
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 6.6e-128 462.6 824 38.0
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 6.0e-121 439.5 626 46.0
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 4.0e-109 400.2 548 44.0
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.3e-107 395.2 802 37.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.9e-91 340.9 646 35.4
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.0e-88 330.9 365 52.9
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.5e-87 327.8 719 34.6
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.2e-74 284.3 433 43.9
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.8e-72 278.5 318 52.2
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.2e-62 245.0 274 52.6
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.2e-59 235.0 285 51.6
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.5e-52 211.1 253 49.8
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 2.5e-50 204.9 170 65.3
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.3e-48 198.4 194 58.8
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.0e-35 156.4 138 60.9
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 8.9e-24 116.7 185 42.7
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 4.9e-22 110.9 325 29.8
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 2.0e-20 105.5 169 37.9
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 4.6e-20 104.4 101 57.4
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 5.0e-19 100.9 206 37.9
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 5.0e-19 100.9 206 37.9
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 8.9e-16 90.1 186 35.5
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 8.9e-16 90.1 186 35.5
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 8.9e-16 90.1 133 42.9
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 6.4e-14 84.0 185 35.7
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 6.4e-14 84.0 60 68.3
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 3.5e-12 78.2 97 45.4
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 1.1e-10 73.2 104 46.2
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 7.3e-10 70.5 95 45.3
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.1e-09 68.9 84 48.8
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 2.8e-09 68.6 85 41.2
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 3.6e-09 68.2 67 46.3
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 8.1e-09 67.0 67 47.8
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 5.2e-08 64.3 164 29.9
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 6.8e-08 63.9 166 31.9
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 2.0e-07 62.4 69 49.3
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-07 62.0 223 25.6
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 3.4e-07 61.6 204 28.9
Rhsim03G0069200 Rhododendron simsii HOM05D000046 ORTHO05D001818 2.9e-06 58.5 77 42.9
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-06 57.8 221 29.4


User provided reference genes

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