Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.4e-187 659.4 329 100.0
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.3e-150 535.8 329 79.3
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 1.0e-145 520.4 303 82.8
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.4e-142 510.0 325 77.5
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.3e-142 509.2 323 76.8
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 2.0e-141 506.1 325 76.6
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 5.7e-141 504.6 325 76.6
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.3e-140 503.4 324 75.6
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 6.4e-140 501.1 302 78.5
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 6.4e-140 501.1 322 74.5
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 8.3e-140 500.7 327 75.2
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 2.4e-139 499.2 323 74.6
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 3.2e-139 498.8 325 75.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 3.2e-139 498.8 326 74.8
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 5.4e-139 498.0 339 74.6
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.2e-138 496.9 325 73.8
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 2.0e-138 496.1 327 74.9
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.0e-138 496.1 325 74.8
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 3.5e-138 495.4 320 74.7
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.5e-138 495.4 318 75.2
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.3e-137 493.4 308 78.2
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.7e-137 493.0 323 74.0
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 2.3e-137 492.7 326 73.9
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.3e-137 492.7 308 78.2
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 3.0e-137 492.3 329 74.2
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 3.9e-137 491.9 322 74.8
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.1e-136 490.3 300 78.3
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.5e-136 490.0 318 74.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.5e-136 490.0 308 77.9
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 2.5e-136 489.2 326 74.2
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.2e-135 486.9 323 73.1
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.6e-135 486.5 305 75.4
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 2.8e-135 485.7 303 78.2
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.4e-134 483.4 302 78.5
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 3.1e-134 482.3 325 75.1
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.1e-134 482.3 306 76.1
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 6.8e-134 481.1 318 73.6
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 6.8e-134 481.1 304 74.7
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.5e-133 479.9 328 73.2
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 2.0e-133 479.6 324 72.8
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.6e-133 479.2 311 73.0
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.4e-133 478.8 306 77.5
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 3.4e-133 478.8 323 71.8
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 7.5e-133 477.6 306 77.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 1.7e-132 476.5 322 72.0
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 2.9e-132 475.7 328 72.3
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 6.4e-132 474.6 306 73.2
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 8.3e-132 474.2 324 71.3
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.1e-131 473.8 324 71.3
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.4e-131 473.4 290 79.3
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.9e-131 473.0 307 73.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.4e-131 471.5 302 75.2
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 9.2e-131 470.7 334 69.2
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 7.8e-130 467.6 327 70.9
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 7.8e-130 467.6 333 72.1
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 2.3e-129 466.1 303 74.3
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 2.3e-129 466.1 303 73.6
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 8.6e-129 464.2 291 77.3
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.1e-128 463.8 306 73.5
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.1e-128 463.8 301 72.4
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 2.5e-128 462.6 318 71.1
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 7.3e-128 461.1 324 71.0
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.2e-127 460.3 392 61.0
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.6e-127 459.9 323 68.7
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.6e-127 459.9 333 70.0
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 2.1e-127 459.5 306 73.5
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.8e-127 459.1 307 71.3
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.1e-126 455.7 308 69.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 3.1e-126 455.7 302 73.2
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 5.2e-126 454.9 337 68.8
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.6e-125 452.6 307 68.7
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.4e-125 451.8 322 66.8
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.3e-124 450.3 328 68.6
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 3.7e-124 448.7 327 66.1
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 8.3e-124 447.6 328 68.3
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-123 447.2 306 68.6
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.4e-123 446.8 302 71.5
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.4e-123 446.0 303 68.6
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 4.1e-123 445.3 307 68.1
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 5.4e-123 444.9 302 71.2
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 5.4e-123 444.9 305 71.1
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 3.5e-122 442.2 308 67.5
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 3.5e-122 442.2 308 67.5
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.5e-122 442.2 305 68.2
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 8.6e-121 437.6 306 69.0
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.1e-120 437.2 303 67.3
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 6.2e-119 431.4 327 67.3
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 8.1e-119 431.0 298 70.5
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 3.1e-118 429.1 312 67.3
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 4.9e-116 421.8 274 74.1
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 4.9e-116 421.8 274 74.1
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 4.0e-110 402.1 300 65.0
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 9.0e-110 401.0 277 67.1
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.5e-109 400.2 327 64.5
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.0e-109 399.8 252 77.8
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 2.1e-98 363.2 284 63.0
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.5e-98 362.5 294 62.2
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 5.1e-97 358.6 301 60.5
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.8e-94 350.1 219 74.4
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 6.9e-94 348.2 241 72.2
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 9.0e-94 347.8 289 62.3
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 7.6e-93 344.7 244 68.0
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.9e-92 342.8 302 54.6
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 4.9e-92 342.0 301 55.1
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-90 337.0 301 54.5
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-89 334.0 302 54.0
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.8e-89 333.6 291 54.0
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 3.0e-89 332.8 300 54.3
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 6.7e-89 331.6 302 53.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.9e-88 330.1 300 54.0
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.9e-88 330.1 302 53.3
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.6e-88 328.6 302 55.0
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.4e-88 328.2 302 54.3
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.4e-88 328.2 302 54.0
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.6e-88 327.8 302 53.0
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.6e-88 327.8 301 52.2
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 6.2e-87 325.1 218 67.9
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 8.2e-87 324.7 304 52.0
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-86 324.3 302 53.0
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.4e-86 323.2 301 53.2
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-86 322.8 302 53.0
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 3.1e-86 322.8 302 53.0
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 5.3e-86 322.0 307 53.7
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-85 320.9 307 51.5
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-85 320.9 302 52.3
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.0e-85 320.1 308 50.3
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.5e-85 318.9 300 52.0
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.8e-85 318.5 302 53.3
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.0e-84 317.8 298 52.3
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.2e-84 316.6 300 52.0
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 8.4e-84 314.7 307 52.4
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.9e-83 313.5 308 50.6
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.2e-83 312.4 300 50.3
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 5.5e-83 312.0 321 50.8
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-82 310.8 272 55.1
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-82 310.1 303 52.1
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-81 307.4 302 51.3
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 5.1e-81 305.4 302 50.7
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.7e-81 304.7 298 52.0
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-79 300.1 304 50.7
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 5.3e-78 295.4 304 47.0
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-75 287.7 276 51.1
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.3e-71 274.2 303 48.8
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 8.2e-71 271.6 289 49.1
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 5.3e-70 268.9 364 40.9
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-69 267.3 282 49.6
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 5.9e-69 265.4 185 70.3
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 7.2e-67 258.5 283 50.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.8e-62 243.8 244 49.2
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 1.5e-56 224.2 238 53.4
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 7.4e-56 221.9 206 54.4
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 7.4e-56 221.9 206 54.4
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 8.2e-55 218.4 290 42.8
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.4e-54 216.9 219 51.1
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 4.2e-51 206.1 315 40.3
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 4.7e-50 202.6 185 55.1
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 5.4e-38 162.5 127 55.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 5.4e-38 162.5 158 51.9
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 5.9e-37 159.1 127 54.3
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 5.9e-37 159.1 127 54.3
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-35 154.8 301 33.6
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 7.5e-32 142.1 85 81.2
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-30 138.3 159 49.7
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 3.5e-29 133.3 110 51.8
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 6.8e-25 119.0 94 67.0
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 6.0e-21 105.9 288 28.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-12 78.2 57 66.7


User provided reference genes

Program Settings