Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13380 Coffea canephora HOM05D000058 ORTHO05D153388 5.4e-86 320.9 150 100.0
Solyc01g010710.4 Solanum lycopersicum HOM05D000058 ORTHO05D010410 2.5e-14 82.8 92 44.6
PGSC0003DMG402000860 Solanum tuberosum HOM05D000058 ORTHO05D010410 3.2e-14 82.4 92 43.5
Thecc.02G354000 Theobroma cacao HOM05D000058 ORTHO05D010410 7.2e-14 81.3 75 53.3
COL.COLO4_23040 Corchorus olitorius HOM05D000058 ORTHO05D010410 1.2e-13 80.5 77 49.4
Duzib251G0054 Durio zibethinus HOM05D000058 ORTHO05D010410 1.2e-13 80.5 74 51.4
Peaxi162Scf00026g02512 Petunia axillaris HOM05D000058 ORTHO05D010410 2.7e-13 79.3 111 39.6
Sopen01g006360 Solanum pennellii HOM05D000058 ORTHO05D010410 2.7e-13 79.3 92 43.5
Atru.chr8.2686 Acer truncatum HOM05D000058 ORTHO05D010410 4.6e-13 78.6 72 51.4
Eucgr.G02538 Eucalyptus grandis HOM05D000058 ORTHO05D010410 6.1e-13 78.2 77 48.1
Atru.chr8.2687 Acer truncatum HOM05D000058 ORTHO05D010410 7.9e-13 77.8 60 58.3
PGSC0003DMG401000860 Solanum tuberosum HOM05D000058 ORTHO05D010410 7.9e-13 77.8 89 43.8
Eucgr.G02537 Eucalyptus grandis HOM05D000058 ORTHO05D010410 1.8e-12 76.6 79 46.8
TAR622G1237 Trochodendron aralioides HOM05D000058 ORTHO05D010410 1.8e-12 76.6 64 50.0
Atru.chr8.2578 Acer truncatum HOM05D000058 ORTHO05D010410 2.3e-12 76.3 72 50.0
MBI09_g13759_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D010410 2.3e-12 76.3 72 50.0
Dinv06522 Davidia involucrata HOM05D000058 ORTHO05D010410 3.0e-12 75.9 119 31.9
Eucgr.G02536 Eucalyptus grandis HOM05D000058 ORTHO05D010410 3.9e-12 75.5 77 46.8
Nitab4.5_0000141g0400 Nicotiana tabacum HOM05D000058 ORTHO05D010410 6.7e-12 74.7 110 39.1
GSVIVG01011354001 Vitis vinifera HOM05D000058 ORTHO05D010410 8.8e-12 74.3 58 55.2
Gohir.A03G098500 Gossypium hirsutum HOM05D000058 ORTHO05D010410 1.5e-11 73.6 63 52.4
Nitab4.5_0002752g0050 Nicotiana tabacum HOM05D000058 ORTHO05D010410 1.5e-11 73.6 61 57.4
GSVIVG01011355001 Vitis vinifera HOM05D000058 ORTHO05D010410 2.5e-11 72.8 60 53.3
Gohir.D07G222800 Gossypium hirsutum HOM05D000058 ORTHO05D010410 3.3e-11 72.4 66 48.5
Gorai.001G257100 Gossypium raimondii HOM05D000058 ORTHO05D010410 3.3e-11 72.4 66 48.5
PGR083G1907 Punica granatum HOM05D000058 ORTHO05D010410 3.3e-11 72.4 63 44.4
Duzib147G0998 Durio zibethinus HOM05D000058 ORTHO05D010410 4.3e-11 72.0 66 48.5
QL02p080864 Quercus lobata HOM05D000058 ORTHO05D010410 5.7e-11 71.6 58 50.0
Gohir.D02G114650 Gossypium hirsutum HOM05D000058 ORTHO05D010410 9.7e-11 70.9 60 53.3
Gorai.005G139300 Gossypium raimondii HOM05D000058 ORTHO05D010410 1.3e-10 70.5 60 53.3
Aqoxy3G00733 Aquilegia oxysepala HOM05D000058 ORTHO05D010410 1.7e-10 70.1 76 43.4
Nn3g17144 Nelumbo nucifera HOM05D000058 ORTHO05D010410 2.2e-10 69.7 60 53.3
Nitab4.5_0002752g0060 Nicotiana tabacum HOM05D000058 ORTHO05D010410 2.2e-10 69.7 89 44.9
Cfa007521 Carpinus fangiana HOM05D000058 ORTHO05D010410 2.8e-10 69.3 64 43.8
Ciclev10013776m.g Citrus clementina HOM05D000058 ORTHO05D010410 2.8e-10 69.3 74 44.6
Thecc.04G076300 Theobroma cacao HOM05D000058 ORTHO05D010410 2.8e-10 69.3 64 48.4
Ciclev10013839m.g Citrus clementina HOM05D000058 ORTHO05D010410 6.3e-10 68.2 60 46.7
Lsat_1_v5_gn_4_176980 Lactuca sativa HOM05D000058 ORTHO05D010410 2.4e-09 66.2 81 42.0
Aqoxy3G00732 Aquilegia oxysepala HOM05D000058 ORTHO05D010410 3.1e-09 65.9 101 35.6
Solyc01g010720.4 Solanum lycopersicum HOM05D000058 ORTHO05D010410 4.1e-09 65.5 67 47.8
Thecc.02G353900 Theobroma cacao HOM05D000058 ORTHO05D010410 4.1e-09 65.5 59 52.5
HanXRQChr12g0357401 Helianthus annuus HOM05D000058 ORTHO05D010410 6.9e-09 64.7 58 50.0
Pp3c7_23150 Physcomitrium patens HOM05D000058 ORTHO05D000077 6.9e-09 64.7 84 39.3
Pp3c1_1270 Physcomitrium patens HOM05D000058 ORTHO05D000077 9.1e-09 64.3 61 41.0
SalBow6G6586 Salvia bowleyana HOM05D000058 ORTHO05D000077 1.5e-08 63.5 121 30.6
Oeu049474.1 Olea europaea HOM05D000058 ORTHO05D000077 2.0e-08 63.2 116 31.9
SEGI_09854 Sequoiadendron giganteum HOM05D000058 ORTHO05D000077 2.0e-08 63.2 78 42.3
Atru.chr1.1393 Acer truncatum HOM05D000058 ORTHO05D000077 2.6e-08 62.8 114 29.8
Atru.chr11.1147 Acer truncatum HOM05D000058 ORTHO05D000077 2.6e-08 62.8 114 29.8
MSTRG.5043 Avicennia marina HOM05D000058 ORTHO05D000077 2.6e-08 62.8 109 33.9
EL10Ac2g04377 Beta vulgaris HOM05D000058 ORTHO05D000077 3.4e-08 62.4 115 28.7
Duzib251G0435 Durio zibethinus HOM05D000058 ORTHO05D010410 3.4e-08 62.4 59 50.8
Mapoly0076s0091 Marchantia polymorpha HOM05D000058 ORTHO05D000077 3.4e-08 62.4 64 40.6
AUR62023100 Chenopodium quinoa HOM05D000058 ORTHO05D000077 4.5e-08 62.0 115 27.0
Lalb_Chr08g0240771 Lupinus albus HOM05D000058 ORTHO05D000077 4.5e-08 62.0 77 40.3
TAR636G3430 Trochodendron aralioides HOM05D000058 ORTHO05D000077 4.5e-08 62.0 108 32.4
ATR0376G001 Amborella trichopoda HOM05D000058 ORTHO05D010410 5.9e-08 61.6 82 37.8
CAN.G482.2 Capsicum annuum HOM05D000058 ORTHO05D010410 5.9e-08 61.6 62 51.6
FAN01G0308 Fragaria x ananassa HOM05D000058 ORTHO05D000077 7.7e-08 61.2 108 28.7
Zm00001eb329580 Zea mays HOM05D000058 ORTHO05D000077 1.0e-07 60.8 66 42.4
Ciclev10031313m.g Citrus clementina HOM05D000058 ORTHO05D000077 1.7e-07 60.1 114 27.2
Glyma.09G226700 Glycine max HOM05D000058 ORTHO05D000077 1.7e-07 60.1 107 29.9
Peaxi162Scf01270g00127 Petunia axillaris HOM05D000058 ORTHO05D000077 1.7e-07 60.1 100 33.0
Ca_21327_v3 Cicer arietinum L. HOM05D000058 ORTHO05D000077 2.2e-07 59.7 92 32.6
Lj3g0004003 Lotus japonicus HOM05D000058 ORTHO05D000077 2.2e-07 59.7 115 29.6
Actinidia19425 Actinidia chinensis HOM05D000058 ORTHO05D000077 2.9e-07 59.3 108 29.6
MSTRG.28050 Avicennia marina HOM05D000058 ORTHO05D000077 2.9e-07 59.3 109 31.2
Gohir.A07G215800 Gossypium hirsutum HOM05D000058 ORTHO05D010410 2.9e-07 59.3 77 40.3
Manes.11G103100 Manihot esculenta HOM05D000058 ORTHO05D000077 2.9e-07 59.3 121 25.6
Solyc01g087920.2 Solanum lycopersicum HOM05D000058 ORTHO05D000077 2.9e-07 59.3 83 34.9
TWI60G0220 Tripterygium wilfordii HOM05D000058 ORTHO05D000077 2.9e-07 59.3 77 39.0
Actinidia23249 Actinidia chinensis HOM05D000058 ORTHO05D000077 3.8e-07 58.9 81 35.8
Peaxi162Scf00344g00185 Petunia axillaris HOM05D000058 ORTHO05D000077 3.8e-07 58.9 100 32.0
Peaxi162Scf01108g00327 Petunia axillaris HOM05D000058 ORTHO05D000077 3.8e-07 58.9 108 29.6
Sc07g0002140 Simmondsia chinensis HOM05D000058 ORTHO05D000077 3.8e-07 58.9 88 33.0
Dinv07430 Davidia involucrata HOM05D000202 ORTHO05D000117 5.0e-07 58.5 58 46.6
RcHm_v2.0_Chr4g0446791 Rosa chinensis HOM05D000058 ORTHO05D000077 5.0e-07 58.5 114 26.3
PGSC0003DMG400006775 Solanum tuberosum HOM05D000058 ORTHO05D000077 5.0e-07 58.5 83 34.9
Cpa.g.sc0.129 Carica papaya HOM05D000058 ORTHO05D000077 6.5e-07 58.2 106 27.4
Lalb_Chr12g0206141 Lupinus albus HOM05D000058 ORTHO05D000077 6.5e-07 58.2 77 39.0
Os07g0656900 Oryza sativa ssp. japonica HOM05D000058 ORTHO05D000077 6.5e-07 58.2 69 40.6
Psat7g197360 Pisum sativum HOM05D000058 ORTHO05D000077 6.5e-07 58.2 92 31.5
SEGI_34820 Sequoiadendron giganteum HOM05D000058 ORTHO05D000077 6.5e-07 58.2 67 41.8
Lj3g0016599 Lotus japonicus HOM05D000058 ORTHO05D000077 8.5e-07 57.8 99 29.3
Prupe.1G348300 Prunus persica HOM05D000058 ORTHO05D000077 8.5e-07 57.8 121 24.0
Rhsim07G0059000 Rhododendron simsii HOM05D000058 ORTHO05D000077 8.5e-07 57.8 81 33.3
SEGI_05307 Sequoiadendron giganteum HOM05D000058 ORTHO05D010410 8.5e-07 57.8 64 42.2
AagrBONN_evm.TU.Sc2ySwM_368.2494 Anthoceros agrestis HOM05D000058 ORTHO05D000077 1.1e-06 57.4 59 42.4
Medtr3g090150 Medicago truncatula HOM05D000058 ORTHO05D000077 1.1e-06 57.4 77 39.0
TPR.G8363 Trifolium pratense HOM05D000058 ORTHO05D000077 1.1e-06 57.4 91 31.9
VMungo1127G1962 Vigna mungo HOM05D000058 ORTHO05D000077 1.1e-06 57.4 72 38.9
Zm00001eb110640 Zea mays HOM05D000058 ORTHO05D000077 1.1e-06 57.4 66 40.9
AL1G51870 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 1.4e-06 57.0 85 36.5
Ca_16652_v3 Cicer arietinum L. HOM05D000058 ORTHO05D000077 1.4e-06 57.0 77 37.7
Gohir.D13G061200 Gossypium hirsutum HOM05D000058 ORTHO05D000077 1.4e-06 57.0 106 30.2
TAR381G1145 Trochodendron aralioides HOM05D003222 ORTHO05D003706 1.4e-06 57.0 77 37.7
Actinidia23251 Actinidia chinensis HOM05D000058 ORTHO05D000077 1.9e-06 56.6 68 38.2
Carub.0001s3476 Capsella rubella HOM05D000058 ORTHO05D000077 1.9e-06 56.6 77 37.7
Dinv07429 Davidia involucrata HOM05D000058 ORTHO05D000077 1.9e-06 56.6 58 46.6
ECA233G2635 Erigeron canadensis HOM05D000058 ORTHO05D000077 1.9e-06 56.6 97 26.8
TPR.G18766 Trifolium pratense HOM05D000058 ORTHO05D000077 1.9e-06 56.6 77 36.4
vmacro16039 Vaccinium macrocarpon HOM05D000058 ORTHO05D000077 1.9e-06 56.6 113 27.4
VMungo1127G0487 Vigna mungo HOM05D000058 ORTHO05D000077 1.9e-06 56.6 121 26.4
Cc02_g28940 Coffea canephora HOM05D000058 ORTHO05D000077 2.5e-06 56.2 108 25.9
Nitab4.5_0008942g0040 Nicotiana tabacum HOM05D000058 ORTHO05D000077 2.5e-06 56.2 85 34.1
Gorai.013G069700 Gossypium raimondii HOM05D000058 ORTHO05D000077 3.2e-06 55.8 106 29.2
Medtr0003s0560 Medicago truncatula HOM05D000058 ORTHO05D000077 3.2e-06 55.8 92 29.3
CAN.G523.100 Capsicum annuum HOM05D000058 ORTHO05D000077 4.2e-06 55.5 77 36.4
CARHR076070 Cardamine hirsuta HOM05D000058 ORTHO05D000077 4.2e-06 55.5 124 26.6
Dinv25810 Davidia involucrata HOM05D000058 ORTHO05D000077 4.2e-06 55.5 77 37.7
Hma1.2p1_0107F.1_g051440 Hydrangea macrophylla HOM05D000058 ORTHO05D000077 4.2e-06 55.5 77 37.7
Nitab4.5_0001619g0120 Nicotiana tabacum HOM05D000058 ORTHO05D000077 4.2e-06 55.5 77 35.1
Prupe.8G019200 Prunus persica HOM05D000058 ORTHO05D000077 4.2e-06 55.5 85 32.9
A05p44950 Brassica napus HOM05D000058 ORTHO05D000077 5.5e-06 55.1 124 26.6
CDE07G0577 Ceratophyllum demersum HOM05D000058 ORTHO05D000077 5.5e-06 55.1 69 36.2
AUR62017704 Chenopodium quinoa HOM05D000058 ORTHO05D000077 5.5e-06 55.1 100 28.0
AUR62032976 Chenopodium quinoa HOM05D000058 ORTHO05D000077 5.5e-06 55.1 100 28.0
MELO3C022641.2 Cucumis melo HOM05D000058 ORTHO05D000077 5.5e-06 55.1 108 27.8
Lj3g0016744 Lotus japonicus HOM05D000058 ORTHO05D000077 5.5e-06 55.1 108 25.9
MBI17_g18129_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000077 5.5e-06 55.1 108 28.7
Medtr4g075150 Medicago truncatula HOM05D000058 ORTHO05D000077 5.5e-06 55.1 116 26.7
PGR083G2415 Punica granatum HOM05D000058 ORTHO05D000077 5.5e-06 55.1 82 30.5
Sc10g0004680 Simmondsia chinensis HOM05D000058 ORTHO05D000077 5.5e-06 55.1 87 32.2
THA.LOC104818373 Tarenaya hassleriana HOM05D000058 ORTHO05D000077 5.5e-06 55.1 88 29.5
Duzib147G0779 Durio zibethinus HOM05D000058 ORTHO05D000077 7.2e-06 54.7 74 36.5
Lj3g0017556 Lotus japonicus HOM05D000058 ORTHO05D000077 7.2e-06 54.7 108 25.9
Sopen01g034870 Solanum pennellii HOM05D000058 ORTHO05D000077 7.2e-06 54.7 103 31.1
SGA_v2.0_scaffold90G27686 Striga asiatica HOM05D000058 ORTHO05D000077 7.2e-06 54.7 69 31.9
HPP92_007309 Vanilla planifolia HOM05D000058 ORTHO05D000077 7.2e-06 54.7 96 27.1
GSVIVG01032905001 Vitis vinifera HOM05D000058 ORTHO05D000077 7.2e-06 54.7 74 35.1
CiPaw.15G021300 Carya illinoinensis HOM05D000058 ORTHO05D000077 9.4e-06 54.3 68 38.2
Glyma.11G099700 Glycine max HOM05D000058 ORTHO05D000077 9.4e-06 54.3 64 34.4
Lalb_Chr11g0072641 Lupinus albus HOM05D000058 ORTHO05D000077 9.4e-06 54.3 108 25.9
MD10G1015500 Malus domestica HOM05D000058 ORTHO05D000077 9.4e-06 54.3 85 34.1
Mapoly0037s0132 Marchantia polymorpha HOM05D000058 ORTHO05D000077 9.4e-06 54.3 112 32.1
Nn5g28625 Nelumbo nucifera HOM05D000058 ORTHO05D000077 9.4e-06 54.3 77 35.1
Psat0s2193g0120 Pisum sativum HOM05D000058 ORTHO05D000077 9.4e-06 54.3 77 36.4
SalBow2G2069 Salvia bowleyana HOM05D000058 ORTHO05D000077 9.4e-06 54.3 68 30.9
Sed0008046 Sechium edule HOM05D000058 ORTHO05D000077 9.4e-06 54.3 113 24.8


User provided reference genes

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