Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.0e-182 643.3 323 100.0
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 4.4e-93 345.5 330 56.4
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.7e-92 343.6 257 66.5
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.1e-91 340.9 324 55.9
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 3.5e-90 335.9 331 55.0
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 7.7e-90 334.7 313 56.2
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 2.3e-89 333.2 261 65.5
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.3e-89 333.2 323 55.1
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 6.5e-89 331.6 258 65.9
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 6.5e-89 331.6 263 63.1
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 8.6e-89 331.3 271 63.1
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.5e-88 329.7 317 55.8
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 4.2e-88 328.9 315 58.4
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 2.1e-87 326.6 256 64.8
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 6.1e-87 325.1 263 62.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.0e-87 324.7 258 63.2
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.0e-86 324.3 261 62.8
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.4e-86 323.9 291 59.1
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 1.8e-86 323.6 260 61.5
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 5.2e-86 322.0 316 56.0
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 5.2e-86 322.0 260 63.1
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.5e-85 320.5 328 54.3
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.0e-85 320.1 308 54.2
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 2.0e-85 320.1 270 60.7
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.6e-85 319.7 256 62.5
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 5.7e-85 318.5 237 65.8
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.8e-85 317.8 258 60.9
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 9.8e-85 317.8 260 63.1
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.3e-84 317.4 258 60.9
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.7e-84 317.0 257 61.1
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.7e-84 317.0 257 61.5
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.3e-84 315.1 257 61.1
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 6.3e-84 315.1 221 71.0
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.1e-83 314.3 319 54.5
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-83 314.3 278 57.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.1e-83 312.8 258 63.2
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.1e-83 312.4 309 56.0
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 9.2e-83 311.2 221 70.6
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 2.0e-82 310.1 260 63.5
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 3.5e-82 309.3 259 61.8
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 3.5e-82 309.3 308 54.9
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 7.8e-82 308.1 303 54.1
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.0e-81 307.8 224 67.4
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.7e-81 307.0 316 52.5
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.7e-81 307.0 259 62.2
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.7e-81 307.0 259 60.6
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 8.6e-81 304.7 260 59.6
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 8.6e-81 304.7 221 67.4
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.5e-80 303.9 263 58.9
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.5e-80 303.9 260 60.8
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.9e-80 303.5 276 57.2
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.5e-80 303.1 223 66.4
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.3e-80 302.8 256 60.5
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 3.3e-80 302.8 270 57.0
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 5.6e-80 302.0 280 57.1
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 5.6e-80 302.0 258 59.3
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 5.6e-80 302.0 256 60.5
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 7.3e-80 301.6 251 61.8
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 9.5e-80 301.2 237 63.7
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 9.5e-80 301.2 339 50.4
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.2e-79 300.8 257 58.8
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.6e-79 300.4 275 57.1
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.6e-79 300.4 371 47.7
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.8e-79 299.7 343 49.9
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 6.1e-79 298.5 343 49.9
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 8.0e-79 298.1 217 65.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.0e-78 297.7 257 58.4
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.2e-77 294.3 258 59.3
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.5e-77 293.9 305 53.4
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.2e-74 284.3 286 52.4
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 4.6e-74 282.3 259 56.8
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 4.6e-74 282.3 260 58.1
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 3.9e-73 279.3 342 48.8
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 8.6e-73 278.1 285 52.3
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.5e-72 276.6 221 64.3
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 3.3e-72 276.2 269 53.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 4.3e-72 275.8 274 54.4
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 9.5e-72 274.6 328 48.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-70 271.2 287 51.2
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.1e-70 271.2 342 47.4
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.3e-70 270.0 263 52.5
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 8.9e-70 268.1 283 52.7
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.5e-69 267.3 265 52.8
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.0e-69 266.9 264 56.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.6e-69 266.5 260 54.2
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.4e-69 265.8 266 54.5
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-68 264.2 309 48.5
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.7e-68 262.7 308 46.4
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.4e-68 261.9 311 47.9
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.9e-67 260.4 263 51.3
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 3.2e-67 259.6 263 52.5
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 4.1e-67 259.2 290 49.3
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.4e-67 258.8 263 55.1
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-66 257.7 288 49.3
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.6e-66 257.3 256 53.9
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.6e-66 257.3 254 52.4
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.5e-66 256.1 309 49.5
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 6.0e-66 255.4 255 51.8
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 7.8e-66 255.0 265 53.2
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-65 254.2 242 55.0
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-65 254.2 264 53.4
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.7e-65 253.8 289 48.4
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.0e-65 252.3 283 49.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.9e-64 250.4 260 51.2
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.3e-64 249.2 256 50.8
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.3e-64 249.2 256 50.8
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.6e-64 248.8 217 56.2
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-63 247.7 256 50.8
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-63 247.7 239 54.8
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-63 247.3 266 50.4
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-63 246.9 266 50.4
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.1e-63 246.9 266 50.4
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.7e-63 245.7 315 45.4
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.3e-62 243.4 230 53.9
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.2e-61 241.1 269 49.8
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.0e-61 240.4 263 50.2
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 2.0e-61 240.4 194 63.9
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 7.5e-61 238.4 258 50.4
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-59 234.2 229 53.3
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 7.1e-59 231.9 194 60.3
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.2e-58 231.1 194 60.3
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.7e-57 227.3 222 53.2
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 5.1e-57 225.7 264 46.6
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 9.5e-56 221.5 199 59.3
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.2e-53 214.5 212 52.8
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 7.6e-53 211.8 211 51.7
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.8e-52 209.5 214 51.9
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 6.4e-52 208.8 214 51.9
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 6.4e-52 208.8 214 51.9
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.4e-52 208.8 214 50.9
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.1e-51 208.0 180 59.4
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-51 207.2 214 50.9
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.3e-49 201.1 207 51.2
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.3e-49 201.1 214 50.0
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.3e-49 201.1 214 50.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.7e-49 200.7 214 49.5
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.7e-49 198.4 174 59.2
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.6e-45 186.8 312 41.3
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 9.9e-45 184.9 227 47.1
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.4e-43 181.0 140 64.3
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 9.3e-43 178.3 195 45.6
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 6.6e-41 172.2 225 46.7
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.9e-40 170.6 127 66.1
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.8e-39 166.0 135 64.4
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 3.1e-38 163.3 168 51.2
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.5e-37 159.5 236 41.9
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.6e-34 151.0 227 41.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.6e-34 149.4 140 55.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.0e-33 148.3 177 50.3
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 8.7e-33 145.2 157 51.0
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.8e-31 140.2 127 60.6
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 8.1e-31 138.7 133 59.4
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 6.9e-30 135.6 215 40.0
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 3.4e-29 133.3 120 61.7
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.7e-28 131.0 120 60.8
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-27 128.3 117 55.6
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.9e-27 127.5 233 36.9
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.6e-26 124.4 191 40.3
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.1e-26 124.0 146 44.5
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-25 121.3 84 70.2
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 6.2e-23 112.5 252 33.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-22 110.9 77 67.5
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 8.4e-20 102.1 82 56.1
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.8e-17 94.4 82 52.4
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.7e-16 89.4 85 58.8
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.4e-14 84.7 89 48.3
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.2e-12 77.4 183 29.0
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.7e-10 70.5 179 34.6
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.8e-09 67.8 162 34.0
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 1.8e-09 67.8 151 32.5
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.1e-09 66.2 59 50.8
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 6.7e-09 65.9 75 56.0
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 6.3e-07 59.3 127 34.6
AagrBONN_evm.TU.Sc2ySwM_228.1651 Anthoceros agrestis HOM05D001535 ORTHO05D003710 1.1e-06 58.5 211 27.5
Hma1.2p1_1598F.1_g293010 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 4.1e-06 56.6 168 31.5
SalBow1G2146 Salvia bowleyana HOM05D001535 ORTHO05D003710 5.3e-06 56.2 129 33.3


User provided reference genes

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