Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 3.0e-95 352.4 273 100.0
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 4.5e-30 136.0 181 50.3
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 1.1e-28 131.3 173 48.6
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.6e-27 127.5 118 53.4
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 3.5e-27 126.3 132 55.3
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 6.0e-27 125.6 71 73.2
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 7.9e-27 125.2 140 48.6
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 7.9e-27 125.2 71 74.6
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 1.3e-26 124.4 144 52.1
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 2.3e-26 123.6 111 53.2
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 3.0e-26 123.2 169 47.9
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 3.9e-26 122.9 70 74.3
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 6.7e-26 122.1 173 50.9
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 6.7e-26 122.1 148 48.0
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 6.7e-26 122.1 178 44.4
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 8.7e-26 121.7 111 54.1
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 8.7e-26 121.7 70 72.9
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 1.5e-25 120.9 143 51.0
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 1.5e-25 120.9 118 60.2
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 1.9e-25 120.6 71 71.8
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 2.5e-25 120.2 94 68.1
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 2.5e-25 120.2 98 61.2
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 3.3e-25 119.8 173 46.2
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 3.3e-25 119.8 171 47.4
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 3.3e-25 119.8 111 53.2
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 4.3e-25 119.4 109 50.5
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 4.3e-25 119.4 113 55.8
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 4.3e-25 119.4 225 42.2
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 5.6e-25 119.0 141 52.5
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 5.6e-25 119.0 80 65.0
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 7.4e-25 118.6 119 52.1
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 1.3e-24 117.9 181 46.4
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 1.3e-24 117.9 113 51.3
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.6e-24 117.5 91 60.4
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 1.6e-24 117.5 80 62.5
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 2.1e-24 117.1 139 48.2
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 2.1e-24 117.1 71 69.0
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 2.8e-24 116.7 80 67.5
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.8e-24 116.7 144 46.5
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 3.7e-24 116.3 108 57.4
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 4.8e-24 115.9 171 49.7
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 4.8e-24 115.9 68 69.1
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 6.2e-24 115.5 70 70.0
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 6.2e-24 115.5 117 50.4
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 6.2e-24 115.5 116 52.6
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 8.1e-24 115.2 114 50.0
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.1e-23 114.8 140 51.4
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.1e-23 114.8 95 57.9
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-23 114.8 71 69.0
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 1.1e-23 114.8 88 65.9
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 1.1e-23 114.8 98 60.2
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.4e-23 114.4 148 44.6
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 1.8e-23 114.0 71 69.0
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 1.8e-23 114.0 144 50.0
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 1.8e-23 114.0 113 53.1
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 3.1e-23 113.2 126 46.8
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 3.1e-23 113.2 126 46.8
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 3.1e-23 113.2 116 50.9
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 3.1e-23 113.2 216 40.3
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 4.0e-23 112.8 71 67.6
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 5.3e-23 112.5 127 51.2
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 5.3e-23 112.5 97 55.7
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 5.3e-23 112.5 109 53.2
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 6.9e-23 112.1 70 65.7
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 6.9e-23 112.1 71 69.0
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 6.9e-23 112.1 166 45.2
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 6.9e-23 112.1 141 49.6
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 6.9e-23 112.1 70 67.1
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.2e-22 111.3 71 64.8
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.2e-22 111.3 126 46.8
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 1.2e-22 111.3 147 44.2
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.2e-22 111.3 70 68.6
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 2.0e-22 110.5 70 68.6
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.0e-22 110.5 113 54.9
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 2.6e-22 110.2 125 51.2
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 2.6e-22 110.2 125 51.2
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 2.6e-22 110.2 125 51.2
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.6e-22 110.2 85 65.9
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.6e-22 110.2 66 71.2
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 3.4e-22 109.8 152 47.4
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.4e-22 109.8 152 47.4
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 3.4e-22 109.8 168 44.6
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 4.5e-22 109.4 122 50.8
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 4.5e-22 109.4 85 56.5
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 4.5e-22 109.4 158 47.5
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 5.8e-22 109.0 66 71.2
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 5.8e-22 109.0 112 52.7
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 5.8e-22 109.0 70 61.4
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 7.6e-22 108.6 116 48.3
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 7.6e-22 108.6 64 68.8
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 1.0e-21 108.2 157 37.6
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.3e-21 107.8 154 47.4
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 1.3e-21 107.8 133 51.9
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.3e-21 107.8 130 45.4
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.3e-21 107.8 137 50.4
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.7e-21 107.5 197 41.1
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 1.7e-21 107.5 68 67.6
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 1.7e-21 107.5 71 62.0
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 1.7e-21 107.5 64 68.8
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 2.2e-21 107.1 131 48.9
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 2.2e-21 107.1 64 67.2
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 2.9e-21 106.7 186 45.2
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 2.9e-21 106.7 118 45.8
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.9e-21 106.7 70 62.9
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 2.9e-21 106.7 166 45.2
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 3.8e-21 106.3 65 70.8
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 4.9e-21 105.9 116 53.4
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 8.4e-21 105.1 133 50.4
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 8.4e-21 105.1 171 38.0
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 1.1e-20 104.8 67 64.2
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.1e-20 104.8 112 55.4
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.4e-20 104.4 141 44.0
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.4e-20 104.4 167 38.3
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 7.1e-20 102.1 62 71.0
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 7.1e-20 102.1 64 70.3
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 7.1e-20 102.1 64 70.3
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 9.3e-20 101.7 62 69.4
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 9.3e-20 101.7 66 65.2
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.6e-19 100.9 118 50.0
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 1.6e-19 100.9 188 38.8
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 1.6e-19 100.9 103 48.5
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 1.6e-19 100.9 66 60.6
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 1.6e-19 100.9 69 60.9
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 4.6e-19 99.4 145 46.9
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 4.6e-19 99.4 145 46.9
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 4.6e-19 99.4 69 62.3
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 6.0e-19 99.0 60 70.0
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 6.0e-19 99.0 166 38.6
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.3e-18 97.8 106 49.1
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.3e-18 97.8 64 60.9
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.3e-18 97.8 122 44.3
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 3.0e-18 96.7 65 58.5
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 3.0e-18 96.7 164 40.9
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.9e-18 96.3 138 39.9
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 6.7e-18 95.5 141 41.8
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 1.5e-17 94.4 71 54.9
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.5e-17 94.4 171 40.4
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 3.3e-17 93.2 70 57.1
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 5.7e-17 92.4 173 39.9
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 7.4e-17 92.0 148 37.8
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 1.3e-16 91.3 132 39.4
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 4.8e-16 89.4 60 63.3
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 6.2e-16 89.0 70 54.3
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 6.2e-16 89.0 70 54.3
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 6.2e-16 89.0 70 54.3
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 6.2e-16 89.0 70 54.3
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 6.2e-16 89.0 117 42.7
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 6.2e-16 89.0 117 42.7
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 1.8e-15 87.4 89 47.2
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 2.6e-14 83.6 123 36.6
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.4e-14 83.2 54 63.0
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.4e-14 83.2 54 63.0
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.4e-14 83.2 54 63.0
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.4e-14 83.2 54 63.0
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 4.5e-14 82.8 151 35.8
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 1.7e-13 80.9 65 49.2
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 5.0e-13 79.3 131 39.7
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 9.3e-12 75.1 65 46.2
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 9.3e-12 75.1 125 40.8
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 2.3e-10 70.5 58 51.7
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.9e-10 69.7 68 45.6
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 8.7e-10 68.6 66 45.5
SMO353G0120 Selaginella moellendorffii HOM05D003879 ORTHO05D003858 8.7e-10 68.6 93 41.9
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 1.1e-09 68.2 160 34.4
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.1e-09 68.2 160 34.4
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.1e-09 68.2 160 34.4
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.5e-09 67.0 67 47.8
Cre14.g619950 Chlamydomonas reinhardtii HOM05D003879 ORTHO05D003858 4.3e-09 66.2 67 46.3
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.7e-08 63.2 125 29.6
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 4.8e-08 62.8 62 45.2
Mapoly0074s0048 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.4e-07 61.2 127 31.5
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 2.4e-07 60.5 63 50.8
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.5e-06 57.8 117 33.3
A09p52500 Brassica napus HOM05D003879 ORTHO05D003858 2.6e-06 57.0 47 51.1
BcaB08g36120 Brassica carinata HOM05D015339 ORTHO05D003858 4.5e-06 56.2 142 28.2
CARHR018730 Cardamine hirsuta HOM05D013370 ORTHO05D015382 5.9e-06 55.8 66 40.9
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 1.0e-05 55.1 62 40.3
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 1.0e-05 55.1 67 38.8


User provided reference genes

Program Settings