Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 3.9e-162 574.7 281 100.0
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.0e-106 390.6 279 67.0
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.8e-106 389.8 279 67.0
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 1.2e-102 377.1 278 67.6
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 3.4e-102 375.6 278 66.5
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 5.0e-101 371.7 282 64.9
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 1.9e-100 369.8 279 64.5
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 2.1e-99 366.3 281 64.1
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 2.7e-99 365.9 281 63.7
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 2.7e-99 365.9 279 63.8
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 7.9e-99 364.4 279 63.8
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 7.9e-99 364.4 279 64.2
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 3.9e-98 362.1 279 64.2
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 5.1e-98 361.7 281 63.7
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 3.3e-97 359.0 279 63.1
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 1.3e-96 357.1 279 62.7
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 3.7e-96 355.5 281 62.3
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 1.8e-95 353.2 234 69.7
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 5.3e-95 351.7 287 61.0
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 2.2e-93 346.3 279 62.0
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 6.5e-93 344.7 280 61.8
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 1.4e-92 343.6 279 60.6
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 2.5e-92 342.8 278 60.8
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 2.5e-92 342.8 279 60.9
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 1.2e-91 340.5 282 59.9
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 3.6e-91 339.0 277 60.6
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 4.7e-91 338.6 279 61.6
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 6.1e-91 338.2 279 59.1
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 1.5e-89 333.6 278 59.4
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 4.4e-89 332.0 281 58.4
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 5.7e-89 331.6 282 57.8
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 7.4e-89 331.3 374 48.4
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 9.7e-89 330.9 285 59.6
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 9.7e-89 330.9 276 60.5
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 1.3e-88 330.5 276 60.9
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 1.7e-88 330.1 276 60.1
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 3.7e-88 328.9 282 57.4
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 3.7e-88 328.9 280 58.9
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 1.8e-87 326.6 278 59.7
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 2.4e-87 326.2 279 59.9
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 2.4e-87 326.2 279 58.8
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 7.0e-87 324.7 277 60.3
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 9.1e-87 324.3 280 58.2
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 9.1e-87 324.3 277 58.1
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 1.2e-86 323.9 282 59.2
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 1.6e-86 323.6 275 59.3
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 3.5e-86 322.4 277 59.9
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 3.5e-86 322.4 277 59.9
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 3.5e-86 322.4 279 57.7
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 4.5e-86 322.0 281 57.7
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 4.5e-86 322.0 282 59.9
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 7.7e-86 321.2 278 58.6
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 1.3e-85 320.5 284 56.7
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 2.2e-85 319.7 275 58.2
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.8e-85 318.9 277 57.4
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 5.0e-85 318.5 277 59.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 5.0e-85 318.5 283 56.9
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 5.0e-85 318.5 280 59.3
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 5.0e-85 318.5 273 61.2
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 8.5e-85 317.8 272 57.4
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 1.9e-84 316.6 277 59.2
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 1.9e-84 316.6 277 59.9
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.5e-84 316.2 277 57.0
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 3.2e-84 315.8 276 58.3
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 7.2e-84 314.7 275 58.2
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 9.4e-84 314.3 278 55.8
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 1.2e-83 313.9 277 58.1
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 1.6e-83 313.5 277 58.5
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 2.7e-83 312.8 276 58.7
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 6.1e-83 311.6 277 58.1
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 1.8e-82 310.1 277 57.0
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 7.5e-81 304.7 308 52.6
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 1.1e-79 300.8 314 50.6
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 7.0e-79 298.1 270 58.1
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 2.2e-77 293.1 262 55.0
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 2.2e-77 293.1 279 57.3
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 2.9e-77 292.7 204 65.7
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 1.9e-76 290.0 267 55.8
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 1.9e-76 290.0 355 45.4
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 4.4e-73 278.9 263 54.0
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 9.8e-73 277.7 277 53.4
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 1.7e-72 276.9 499 35.7
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 2.8e-72 276.2 252 56.3
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 1.3e-69 267.3 215 60.5
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 1.2e-67 260.8 255 55.7
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 9.8e-65 251.1 156 73.1
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 1.7e-64 250.4 286 45.5
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 2.8e-64 249.6 278 48.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.2e-59 234.2 317 45.7
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 1.6e-51 207.2 218 52.8
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 7.5e-49 198.4 210 45.2
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 9.8e-49 198.0 188 55.3
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 4.9e-48 195.7 199 52.3
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 2.0e-46 190.3 190 53.7
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 7.3e-44 181.8 264 36.7
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 4.7e-43 179.1 168 50.0
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 3.1e-42 176.4 220 40.0
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 1.9e-39 167.2 186 48.9
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 3.9e-37 159.5 110 65.5
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 1.7e-32 144.1 102 61.8
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 2.4e-26 123.6 216 36.1
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 9.9e-25 118.2 145 48.3
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 1.7e-24 117.5 95 57.9
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 4.2e-23 112.8 70 67.1
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 2.7e-22 110.2 78 66.7
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 3.0e-21 106.7 89 59.6
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 1.3e-16 91.3 68 57.4
PRCOL_00004174 Prasinoderma coloniale HOM05D003201 ORTHO05D008914 3.5e-14 83.2 199 30.7
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 6.0e-14 82.4 243 25.5
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 2.5e-12 77.0 46 67.4


User provided reference genes

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