Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 1.2e-74 283.1 147 100.0
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 9.0e-62 240.4 142 87.3
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.2e-61 240.0 144 84.0
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 2.0e-61 239.2 142 88.0
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 2.0e-61 239.2 144 83.3
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 3.4e-61 238.4 142 83.1
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.3e-60 236.5 144 81.9
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 5.0e-60 234.6 142 82.4
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 1.9e-59 232.6 142 83.8
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 5.5e-59 231.1 142 81.7
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 5.5e-59 231.1 142 85.2
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 9.4e-59 230.3 147 81.6
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 1.2e-58 229.9 142 82.4
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 2.7e-58 228.8 142 81.0
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 2.7e-58 228.8 142 81.7
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 3.6e-58 228.4 142 82.4
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 3.6e-58 228.4 139 82.7
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 4.6e-58 228.0 142 81.7
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 7.9e-58 227.3 141 81.6
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 1.0e-57 226.9 142 82.4
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 1.4e-57 226.5 142 81.0
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 1.4e-57 226.5 141 80.9
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 1.8e-57 226.1 142 78.9
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 1.8e-57 226.1 142 81.0
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 1.8e-57 226.1 141 79.4
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 2.3e-57 225.7 142 81.0
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 3.0e-57 225.3 142 78.9
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 3.0e-57 225.3 142 79.6
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 5.1e-57 224.6 142 82.4
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 6.7e-57 224.2 142 81.0
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 6.7e-57 224.2 142 81.7
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 6.7e-57 224.2 142 80.3
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 1.1e-56 223.4 142 79.6
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 1.5e-56 223.0 142 78.9
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 1.9e-56 222.6 142 81.7
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 2.5e-56 222.2 142 81.7
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 2.5e-56 222.2 138 82.6
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 3.3e-56 221.9 142 81.0
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 4.3e-56 221.5 142 80.3
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 5.7e-56 221.1 144 79.9
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 5.7e-56 221.1 142 77.5
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 9.7e-56 220.3 142 77.5
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 1.7e-55 219.5 142 79.6
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.7e-55 219.5 142 79.6
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 2.2e-55 219.2 142 78.2
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 2.2e-55 219.2 152 76.3
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 2.8e-55 218.8 141 77.3
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 3.7e-55 218.4 142 79.6
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 4.8e-55 218.0 142 79.6
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 6.3e-55 217.6 142 78.9
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 8.2e-55 217.2 142 78.9
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 8.2e-55 217.2 141 80.9
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 1.8e-54 216.1 142 74.6
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 2.4e-54 215.7 133 84.2
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.1e-54 214.9 144 74.3
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.1e-54 214.9 144 74.3
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 1.2e-53 213.4 142 76.8
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 5.9e-53 211.1 142 78.2
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 5.9e-53 211.1 140 75.0
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 7.7e-53 210.7 139 75.5
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 3.8e-52 208.4 154 71.4
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 6.5e-52 207.6 149 75.2
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 1.1e-51 206.8 144 74.3
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 1.1e-51 206.8 188 64.4
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.9e-51 206.1 142 77.5
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 9.4e-51 203.8 143 67.8
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.2e-50 203.4 131 80.2
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 1.6e-50 203.0 142 73.9
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 1.6e-50 203.0 142 74.6
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 2.1e-50 202.6 142 73.2
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 5.1e-49 198.0 149 71.1
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 6.7e-49 197.6 136 72.8
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 2.0e-48 196.1 142 72.5
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 2.6e-48 195.7 138 73.9
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 2.6e-48 195.7 132 73.5
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 5.7e-48 194.5 154 70.1
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 7.4e-48 194.1 142 70.4
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 2.8e-47 192.2 113 87.6
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.1e-46 188.3 144 67.4
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 4.1e-46 188.3 113 83.2
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 6.5e-44 181.0 156 60.9
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 9.4e-43 177.2 144 61.8
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 3.6e-42 175.3 149 61.1
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 2.0e-40 169.5 136 62.5
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 5.7e-40 167.9 128 66.4
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 7.4e-40 167.5 99 83.8
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 9.7e-40 167.2 111 73.9
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 4.8e-39 164.9 144 59.0
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 8.2e-39 164.1 144 58.3
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 1.4e-38 163.3 138 60.1
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 1.4e-38 163.3 118 71.2
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 7.0e-38 161.0 144 57.6
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 9.1e-38 160.6 144 57.6
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 2.6e-37 159.1 144 56.2
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 2.6e-37 159.1 135 58.5
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 2.6e-37 159.1 144 56.9
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 1.0e-36 157.1 143 59.4
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 1.3e-36 156.8 144 55.6
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 1.3e-36 156.8 144 56.2
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.3e-36 156.8 144 56.2
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 2.9e-36 155.6 144 55.6
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.9e-36 155.6 144 55.6
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.9e-35 152.9 144 54.2
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 3.2e-35 152.1 144 54.9
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.2e-35 152.1 144 54.9
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 8.0e-34 147.5 138 51.4
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 3.0e-33 145.6 113 66.4
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 4.1e-30 135.2 96 68.8
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 4.1e-30 135.2 147 57.1
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 4.5e-29 131.7 142 52.8
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 1.1e-27 127.1 143 49.7
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 8.8e-25 117.5 78 73.1
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 8.3e-23 110.9 65 81.5
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 1.3e-20 103.6 63 79.4
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.3e-15 87.0 77 58.4
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 4.1e-14 82.0 61 65.6
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 5.0e-12 75.1 110 43.6
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 1.6e-10 70.1 53 71.7
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 4.4e-08 62.0 34 91.2
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 4.4e-08 62.0 34 91.2
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 4.9e-07 58.5 133 29.3
Cre17.g711950 Chlamydomonas reinhardtii HOM05D006937 ORTHO05D008747 8.3e-07 57.8 101 35.6
Cpa.g.sc1.69 Carica papaya HOM05D006937 ORTHO05D008747 1.9e-06 56.6 33 84.8


User provided reference genes

Program Settings