Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 5.9e-77 292.0 332 100.0
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.0e-57 226.1 322 92.5
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 8.9e-57 224.9 328 89.9
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 3.4e-56 223.0 328 91.5
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 5.8e-56 222.2 329 91.8
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 7.5e-56 221.9 334 91.3
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.3e-55 221.1 333 88.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.3e-55 221.1 334 90.7
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.7e-55 220.7 326 90.8
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.7e-55 220.7 330 91.2
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 2.2e-55 220.3 325 92.3
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 2.2e-55 220.3 334 91.0
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-55 220.3 334 91.0
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.9e-55 219.9 324 92.0
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.9e-55 219.9 324 92.0
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 3.7e-55 219.5 321 93.5
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.9e-55 219.2 327 90.5
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.4e-55 218.8 326 92.6
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 6.4e-55 218.8 324 92.0
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-54 218.0 324 92.6
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.4e-54 217.6 324 92.3
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.4e-54 216.9 339 80.8
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 3.2e-54 216.5 325 91.4
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 4.1e-54 216.1 325 90.5
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 5.4e-54 215.7 321 92.5
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 5.4e-54 215.7 322 90.7
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 5.4e-54 215.7 324 91.7
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 9.2e-54 214.9 319 91.2
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 9.2e-54 214.9 319 91.2
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 9.2e-54 214.9 328 87.5
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 90.7
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.2e-53 214.5 320 92.5
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.6e-53 214.2 321 92.2
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.6e-53 214.2 326 89.6
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.7e-53 213.4 326 89.3
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.7e-53 213.4 318 92.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 4.6e-53 212.6 325 90.5
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 4.6e-53 212.6 324 88.3
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 4.6e-53 212.6 329 86.0
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 6.0e-53 212.2 318 91.2
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 6.0e-53 212.2 317 92.4
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 7.8e-53 211.8 332 89.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 7.8e-53 211.8 325 89.8
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.8e-53 211.8 326 89.3
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 7.8e-53 211.8 327 90.5
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 7.8e-53 211.8 318 93.1
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.0e-52 211.5 325 90.8
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.3e-52 211.1 327 90.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.3e-52 211.1 321 91.3
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.3e-52 211.1 323 89.5
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.7e-52 210.7 323 89.8
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.3e-52 210.3 326 87.7
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 2.3e-52 210.3 326 90.2
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.0e-52 209.9 330 89.1
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 3.9e-52 209.5 332 89.2
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 3.9e-52 209.5 325 90.2
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.9e-52 209.5 332 87.0
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 3.9e-52 209.5 332 89.5
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 5.0e-52 209.1 324 90.4
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 6.6e-52 208.8 323 90.7
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 6.6e-52 208.8 323 90.7
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 6.6e-52 208.8 307 94.5
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 8.6e-52 208.4 325 89.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.6e-52 208.4 328 88.7
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-51 208.0 327 87.5
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.1e-51 208.0 325 90.8
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.1e-51 208.0 325 89.8
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.1e-51 208.0 329 89.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.1e-51 208.0 326 88.7
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.5e-51 207.6 325 89.5
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 311 90.4
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 4.3e-51 206.1 322 90.1
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 4.3e-51 206.1 318 91.8
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 5.6e-51 205.7 323 89.8
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.2e-50 204.5 328 88.7
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 3.6e-50 203.0 307 92.2
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 4.7e-50 202.6 325 88.9
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 4.7e-50 202.6 298 95.3
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 4.7e-50 202.6 321 90.0
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 6.2e-50 202.2 321 90.0
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 6.2e-50 202.2 328 76.2
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 8.0e-50 201.8 311 91.6
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.0e-50 201.8 328 89.0
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.1e-49 201.4 311 91.6
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.1e-49 201.4 327 85.9
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.4e-49 201.1 314 90.8
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.4e-49 201.1 326 88.3
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.8e-49 200.7 321 89.4
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.8e-49 200.7 321 89.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-49 200.7 339 61.4
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.3e-49 200.3 321 89.4
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.3e-49 200.3 323 89.2
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 5.2e-49 199.1 336 87.2
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 5.2e-49 199.1 336 79.2
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.2e-49 199.1 325 87.7
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 8.9e-49 198.4 330 84.8
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.0e-48 197.2 332 87.0
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.4e-48 196.4 330 76.4
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.4e-48 196.4 322 87.3
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 5.8e-48 195.7 332 87.0
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 7.5e-48 195.3 298 92.3
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.5e-48 195.3 243 90.9
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 9.8e-48 194.9 312 90.7
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-47 194.5 321 88.2
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.3e-47 194.5 339 85.8
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.7e-47 194.1 324 88.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.7e-47 194.1 346 65.6
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 2.2e-47 193.7 246 89.0
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 2.9e-47 193.4 363 66.7
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 8.3e-47 191.8 308 91.6
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.9e-46 190.7 249 86.7
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 2.4e-46 190.3 337 72.7
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.4e-46 190.3 339 77.6
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.5e-45 186.4 304 90.8
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.3e-44 184.5 351 70.1
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.7e-44 184.1 332 85.8
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 2.3e-44 183.7 332 83.7
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.0e-44 182.6 321 84.7
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.0e-44 182.6 321 84.7
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.0e-44 182.6 322 84.5
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.1e-43 181.4 243 71.6
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.8e-42 176.8 330 78.5
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.8e-42 176.8 330 78.5
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.2e-42 175.6 222 93.2
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.3e-41 173.7 317 87.1
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 5.2e-41 172.6 322 82.3
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.8e-41 172.2 330 69.7
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.5e-40 171.0 324 86.4
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.5e-40 171.0 322 83.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.0e-40 170.6 251 84.1
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 2.0e-40 170.6 335 82.1
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.5e-40 168.7 342 74.3
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.3e-39 167.9 323 83.0
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.3e-39 167.9 326 85.3
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-39 167.2 107 79.4
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.9e-39 166.8 323 85.4
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.9e-39 166.0 314 72.9
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.4e-38 164.5 304 86.8
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.4e-38 164.5 322 83.5
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.9e-38 164.1 108 78.7
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.2e-38 163.3 109 77.1
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.2e-38 163.3 109 77.1
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 4.1e-38 162.9 317 86.4
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.2e-37 161.4 96 83.3
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 6.0e-37 159.1 85 89.4
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 3.0e-36 156.8 327 51.1
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 3.0e-36 156.8 101 78.2
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 8.6e-36 155.2 246 80.9
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.5e-35 154.5 98 80.6
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.5e-35 154.5 98 79.6
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 2.5e-35 153.7 101 75.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 2.5e-35 153.7 101 75.2
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 4.7e-34 149.4 105 73.3
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.4e-33 147.9 81 86.4
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.4e-33 147.1 239 81.2
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 7.6e-32 142.1 326 77.0
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 3.9e-28 129.8 81 80.2
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.1e-27 128.3 303 78.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.3e-27 126.3 75 80.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 7.3e-27 125.6 96 63.5
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.2e-23 114.0 277 80.1
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.8e-18 97.1 67 71.6
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.4e-17 94.7 117 91.5
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.4e-17 94.7 105 43.8
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.8e-17 94.4 250 72.0
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.0e-17 93.2 75 65.3
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.2e-16 91.7 259 86.9
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.5e-16 89.7 64 60.9
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 5.8e-16 89.4 118 55.9
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 7.6e-16 89.0 52 76.9
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.2e-13 81.6 41 87.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.7e-13 80.5 59 62.7
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 6.0e-13 79.3 42 90.5
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.1e-11 75.1 42 88.1
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 9.6e-11 72.0 42 85.7
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-10 71.6 50 76.0
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 5.8e-08 62.8 32 93.8
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.9e-07 60.5 32 84.4
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 4.9e-07 59.7 32 87.5
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 4.2e-06 56.6 43 69.8


User provided reference genes

Program Settings