Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 4.2e-201 704.5 364 100.0
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 1.2e-158 563.5 355 80.8
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 3.7e-157 558.5 362 79.8
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.4e-156 555.8 355 80.6
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.7e-154 549.7 336 83.0
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 3.8e-154 548.5 354 79.7
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.6e-152 543.1 365 78.4
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 8.0e-152 540.8 354 78.5
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 8.0e-152 540.8 356 78.9
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 5.2e-151 538.1 361 76.7
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 8.9e-151 537.3 359 77.7
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.0e-150 536.2 318 84.9
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 4.4e-150 535.0 342 81.3
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.8e-149 532.3 353 77.3
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.7e-149 531.9 335 80.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.7e-149 531.9 335 80.9
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.7e-149 531.9 358 76.8
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 4.9e-149 531.6 351 76.9
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.4e-148 530.0 335 80.6
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.4e-148 529.3 362 75.7
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 3.1e-148 528.9 362 75.4
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-148 528.9 350 76.6
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-148 528.5 351 76.6
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 7.0e-148 527.7 344 79.4
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 7.0e-148 527.7 350 76.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.6e-147 526.6 358 76.3
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.7e-147 525.8 360 76.1
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.7e-147 525.8 360 76.1
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 7.8e-147 524.2 340 77.4
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.0e-146 523.9 354 76.6
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.3e-146 523.5 316 83.5
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 2.3e-146 522.7 358 75.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.9e-146 522.3 359 75.2
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 2.9e-146 522.3 354 75.7
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.8e-146 521.9 358 75.4
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 3.8e-146 521.9 355 76.1
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 8.6e-146 520.8 351 75.8
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-145 520.4 384 70.8
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 3.3e-145 518.8 313 81.8
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 5.6e-145 518.1 324 79.9
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 7.3e-145 517.7 354 74.9
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.2e-144 516.9 356 74.7
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 2.1e-144 516.2 358 75.1
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 2.1e-144 516.2 363 73.0
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.1e-144 516.2 347 79.3
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.8e-144 515.8 322 80.4
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 4.7e-144 515.0 356 75.3
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.0e-143 513.8 322 80.4
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.0e-143 513.8 355 75.2
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.4e-143 513.5 358 73.5
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.3e-143 512.7 363 74.1
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 4.0e-143 511.9 359 73.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 6.8e-143 511.1 338 78.7
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.5e-142 510.0 362 73.8
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.0e-142 509.6 339 79.9
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.4e-142 508.8 329 76.6
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 5.8e-142 508.1 363 73.8
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 7.5e-142 507.7 354 74.9
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 9.8e-142 507.3 362 73.2
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 9.8e-142 507.3 363 73.3
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.7e-141 506.5 355 74.4
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.9e-141 505.0 359 72.7
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 6.4e-141 504.6 339 75.5
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.4e-140 502.7 354 74.6
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 2.4e-140 502.7 353 74.2
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.4e-140 502.7 354 74.6
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 3.2e-140 502.3 296 82.8
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 3.2e-140 502.3 382 69.9
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 5.4e-140 501.5 358 72.9
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.7e-139 499.2 354 74.0
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 6.0e-139 498.0 353 73.1
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.0e-138 497.3 359 72.1
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.7e-138 496.5 327 75.2
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 8.6e-138 494.2 349 73.9
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.5e-137 493.4 291 85.2
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.5e-137 492.7 353 72.2
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.5e-137 492.7 353 72.2
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.5e-137 492.7 353 72.2
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.5e-137 492.7 332 75.6
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 4.3e-137 491.9 353 72.0
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 5.6e-137 491.5 353 70.8
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 9.5e-137 490.7 353 71.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 9.5e-137 490.7 353 71.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 9.5e-137 490.7 353 71.7
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.2e-136 490.3 353 71.7
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.6e-136 490.0 354 70.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.1e-136 489.6 354 72.0
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 2.8e-136 489.2 354 72.0
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.8e-136 489.2 358 70.4
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 6.2e-136 488.0 361 70.6
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.1e-135 487.3 353 71.4
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.8e-135 486.5 317 76.0
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 4.0e-135 485.3 353 71.4
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.2e-134 483.8 353 70.3
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.5e-134 483.4 308 77.6
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.4e-134 481.9 347 71.8
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.2e-131 473.8 308 76.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.3e-130 470.3 353 71.7
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 8.6e-130 467.6 355 70.4
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.1e-129 467.2 302 82.5
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.9e-129 466.5 295 77.6
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 7.3e-129 464.5 311 74.9
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 4.7e-128 461.8 366 68.3
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.1e-127 459.1 385 64.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 5.2e-127 458.4 330 73.3
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 8.9e-127 457.6 342 71.1
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.5e-126 456.8 309 74.1
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-125 453.0 313 73.2
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 6.4e-125 451.4 372 66.9
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.4e-124 450.3 407 62.4
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 9.2e-124 447.6 346 65.0
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.1e-122 441.8 361 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 3.3e-121 439.1 322 67.7
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.8e-119 433.3 363 66.7
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 3.1e-119 432.6 314 74.2
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.2e-118 430.6 268 80.2
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.0e-118 429.9 307 73.3
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 4.4e-118 428.7 297 70.0
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 4.4e-118 428.7 346 64.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 9.2e-116 421.0 359 66.0
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.8e-111 406.8 249 81.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 6.9e-111 404.8 363 62.8
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 2.0e-110 403.3 235 85.5
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.4e-108 397.1 302 70.9
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.7e-107 392.9 353 58.9
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.7e-107 392.9 353 58.9
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 4.8e-104 382.1 300 67.7
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.8e-103 380.2 313 62.3
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.4e-103 379.8 357 59.9
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.0e-102 376.7 242 76.9
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 2.8e-96 356.3 232 76.7
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.0e-90 336.3 234 72.2
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 4.3e-89 332.4 223 74.9
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-87 327.4 230 74.8
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.8e-85 319.3 361 53.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.7e-74 282.0 195 74.9
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.5e-70 269.2 262 59.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 5.5e-68 262.3 184 73.4
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.5e-61 238.8 143 77.6
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.4e-57 226.1 167 72.5
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.6e-41 173.7 130 70.8
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.9e-40 169.5 118 72.9
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.4e-39 166.0 119 70.6
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.5e-36 156.0 112 68.8
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 5.2e-34 149.4 82 80.5
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.2e-33 148.3 125 64.8
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.7e-32 143.3 129 65.1
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-31 139.8 117 70.9
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.9e-30 136.0 92 71.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-29 134.8 136 52.9
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.1e-26 123.6 277 29.6
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.7e-21 107.8 88 68.2
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-21 107.5 83 62.7
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.1e-19 100.9 93 61.3
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-18 97.4 91 57.1
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.7e-16 90.1 56 67.9
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 6.4e-16 89.4 79 65.8
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.0e-13 82.0 52 71.2
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 5.1e-13 79.7 73 65.8


User provided reference genes

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