Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 4.2e-303 1043.9 520 100.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 6.1e-238 827.4 504 81.3
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.2e-231 804.7 504 76.2
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.4e-229 799.7 504 77.4
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.5e-228 796.2 511 75.1
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 5.7e-228 794.3 504 76.8
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 8.3e-227 790.4 504 76.8
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 3.2e-226 788.5 504 76.4
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 7.0e-226 787.3 478 79.7
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 2.0e-225 785.8 504 76.4
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 5.9e-225 784.3 475 79.6
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 2.3e-224 782.3 491 77.8
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 3.9e-224 781.6 492 77.8
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 2.5e-223 778.9 475 78.5
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 7.3e-223 777.3 504 74.0
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 7.3e-223 777.3 504 74.8
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.2e-222 776.5 481 77.5
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.3e-221 772.3 505 75.2
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.1e-221 771.9 504 74.8
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 4.0e-221 771.5 484 76.0
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 2.6e-220 768.8 506 73.5
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 3.4e-220 768.5 506 73.9
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 9.8e-220 766.9 476 76.9
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.3e-219 766.5 463 78.8
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.7e-219 766.1 476 76.9
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.7e-219 766.1 514 72.2
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 3.7e-219 765.0 504 74.2
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 6.4e-219 764.2 505 73.1
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 8.3e-219 763.8 476 76.9
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.4e-218 761.1 504 73.4
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.4e-218 761.1 504 73.2
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 9.2e-218 760.4 511 72.2
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.6e-217 759.6 478 76.6
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.7e-217 758.8 504 74.4
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 3.5e-217 758.4 508 72.4
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.7e-216 756.1 499 73.9
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.7e-216 756.1 486 74.3
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.9e-215 752.7 503 71.8
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 3.3e-215 751.9 502 72.1
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.6e-215 751.1 474 77.0
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.2e-214 750.0 482 75.7
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.8e-214 748.8 477 75.9
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.2e-214 747.7 479 74.3
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 6.2e-214 747.7 479 74.3
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-213 746.9 479 74.1
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 4.0e-213 745.0 504 71.2
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 5.2e-213 744.6 481 74.0
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 5.2e-213 744.6 473 74.4
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.8e-213 744.2 479 74.1
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 6.8e-213 744.2 502 72.5
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 8.9e-213 743.8 479 75.4
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 2.0e-212 742.7 504 72.4
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 4.9e-211 738.0 479 74.9
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 6.4e-211 737.6 498 71.1
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 6.4e-211 737.6 498 71.3
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.1e-210 736.9 503 71.2
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.1e-210 736.9 479 73.9
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 2.4e-210 735.7 473 73.8
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 7.1e-210 734.2 507 72.8
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 9.2e-210 733.8 474 74.1
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 2.7e-209 732.3 487 72.5
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 3.5e-209 731.9 474 74.5
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.3e-208 729.9 500 71.8
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 5.1e-208 728.0 505 69.9
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.5e-207 726.5 478 73.8
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 3.3e-207 725.3 474 72.8
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 5.6e-207 724.5 504 70.2
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 9.5e-207 723.8 504 69.2
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 9.5e-207 723.8 472 72.5
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 8.9e-205 717.2 480 69.8
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 2.0e-204 716.1 480 71.2
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 5.8e-204 714.5 488 72.3
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.7e-203 713.0 485 69.9
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.7e-203 713.0 485 69.7
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.7e-203 713.0 499 68.7
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.2e-203 712.6 485 69.7
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.7e-203 711.8 437 78.0
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.7e-203 711.8 489 68.7
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.4e-202 709.9 437 77.3
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.2e-202 708.8 478 70.5
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 7.1e-202 707.6 437 77.8
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 9.2e-202 707.2 504 70.2
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 2.7e-201 705.7 474 70.0
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 7.8e-201 704.1 496 67.9
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 7.8e-201 704.1 496 67.9
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 7.8e-201 704.1 496 67.9
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.3e-200 703.4 482 68.9
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 5.6e-199 698.0 461 72.7
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.2e-198 696.8 504 69.8
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 9.9e-196 687.2 437 74.4
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.3e-195 686.8 437 76.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.7e-195 686.4 493 65.5
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.9e-192 675.2 463 69.3
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 3.3e-191 672.2 488 67.4
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.3e-190 670.2 504 67.3
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 1.6e-190 669.8 494 66.2
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 3.6e-190 668.7 480 67.1
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.6e-190 668.7 470 68.7
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 5.3e-189 664.8 471 69.4
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.9e-189 664.5 465 68.6
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 9.3e-186 654.1 420 74.0
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.8e-182 642.5 475 65.3
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.8e-182 641.7 397 77.3
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 4.8e-182 641.7 464 65.7
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.2e-180 637.1 450 67.1
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.1e-177 626.3 469 65.7
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.5e-175 620.2 487 65.9
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.1e-173 612.5 464 63.4
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 2.6e-172 609.4 478 64.0
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.4e-172 609.0 383 76.0
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 6.7e-160 568.2 437 63.2
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.6e-153 547.0 470 56.4
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 4.1e-149 532.3 463 56.2
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 4.5e-148 528.9 475 56.0
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.2e-145 520.8 471 55.6
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 3.0e-144 516.2 342 74.6
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.9e-140 501.9 323 74.6
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 5.0e-139 498.8 324 76.2
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.7e-137 493.0 339 69.0
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 6.7e-136 488.4 487 50.7
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 9.1e-125 451.4 292 76.4
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.0e-123 448.0 292 76.0
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 5.7e-119 432.2 321 65.7
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 6.3e-118 428.7 462 48.9
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 6.6e-115 418.7 380 56.3
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 7.3e-106 388.7 250 72.0
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 1.5e-95 354.4 602 37.4
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 4.9e-94 349.4 530 41.9
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 3.6e-81 306.6 451 40.1
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.8e-78 296.6 477 39.0
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.9e-68 262.3 155 77.4
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 9.0e-56 222.2 213 53.1
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 8.7e-51 205.7 240 46.2
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 3.6e-44 183.7 152 61.8
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.4e-40 171.0 308 37.7
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.0e-38 163.3 108 75.9
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 6.7e-35 152.9 100 74.0
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 5.3e-32 143.3 115 61.7
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 7.7e-31 139.4 237 38.0
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 5.0e-30 136.7 87 73.6
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 2.6e-23 114.4 89 61.8
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 4.7e-20 103.6 68 76.5
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 9.7e-18 95.9 90 54.4
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 4.5e-15 87.0 66 60.6
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 5.9e-07 60.1 38 73.7


User provided reference genes

Program Settings