Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 0.0e+00 2323.9 1163 100.0
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 4.0e-229 799.3 1189 42.7
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.4e-220 769.6 1219 41.0
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 3.5e-209 733.0 1303 39.4
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 7.8e-209 731.9 1334 38.2
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 2.1e-206 723.8 1310 38.2
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 4.2e-202 709.5 1296 38.2
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 5.6e-199 699.1 1267 37.8
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 3.8e-195 686.4 1301 37.9
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 6.4e-195 685.6 1190 39.3
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 3.0e-192 676.8 1300 36.2
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 3.3e-191 673.3 1370 35.3
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 7.4e-191 672.2 1229 38.6
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.3e-190 671.4 1173 38.2
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 5.3e-189 666.0 1312 36.7
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 1.5e-188 664.5 1403 34.1
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 7.1e-186 655.6 1256 37.4
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.6e-185 654.4 1229 37.1
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 4.6e-185 652.9 1230 37.8
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 2.3e-184 650.6 1319 35.7
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.8e-182 643.7 1308 34.9
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 1.4e-181 641.3 1329 35.1
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 3.8e-179 633.3 1296 35.2
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 1.4e-178 631.3 1194 36.4
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.2e-178 630.2 1318 34.2
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.1e-177 627.5 1333 34.2
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 3.5e-177 626.7 1212 38.1
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 4.6e-177 626.3 1295 35.8
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.8e-174 617.1 1325 34.5
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 4.5e-172 609.8 1547 31.7
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 5.9e-172 609.4 1462 32.1
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 6.5e-171 605.9 1546 31.3
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 1.1e-170 605.1 1164 36.0
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 7.2e-170 602.4 1248 35.4
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 7.2e-170 602.4 1316 34.4
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 3.6e-169 600.1 1208 35.9
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 7.9e-169 599.0 1327 34.0
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.4e-168 598.2 1201 34.5
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 2.5e-167 594.0 1243 34.7
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 5.7e-167 592.8 1206 35.2
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 8.2e-166 589.0 1251 33.8
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 4.1e-165 586.6 1251 35.1
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 9.1e-165 585.5 1187 34.3
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 7.7e-164 582.4 1359 33.1
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 2.1e-161 574.3 1236 34.0
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.6e-161 573.5 1596 30.8
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 2.2e-158 564.3 1392 32.9
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 3.7e-158 563.5 1256 32.2
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 1.5e-156 558.1 1310 33.7
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 2.6e-156 557.4 1330 33.4
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 5.0e-155 553.1 1191 35.2
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 2.5e-154 550.8 1266 33.6
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 2.5e-154 550.8 1399 32.9
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 5.5e-154 549.7 1282 33.3
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 4.7e-153 546.6 1318 33.1
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 5.2e-152 543.1 1470 31.1
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 6.7e-152 542.7 1265 32.8
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 1.5e-151 541.6 1281 32.9
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 5.7e-151 539.7 1274 33.6
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 5.7e-151 539.7 1385 31.0
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 5.7e-151 539.7 1270 33.2
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 1.8e-149 534.6 1212 33.8
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.2e-148 531.9 1473 29.9
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 1.7e-147 528.1 1250 32.2
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 5.7e-143 513.1 1246 32.2
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 5.7e-143 513.1 1175 33.4
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.8e-141 508.1 1353 30.8
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 1.2e-140 505.4 1209 31.9
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 2.0e-140 504.6 1162 32.7
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 1.5e-138 498.4 1341 30.9
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 1.9e-138 498.0 1343 30.8
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 1.9e-138 498.0 1343 30.8
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 9.4e-138 495.7 1343 31.5
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 1.2e-137 495.4 1365 30.4
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 3.6e-137 493.8 1250 31.7
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.0e-136 492.3 1176 32.1
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 2.3e-136 491.1 1298 30.6
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 7.5e-135 486.1 1289 31.4
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 2.2e-134 484.6 1539 28.4
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 1.1e-130 472.2 1172 32.2
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 1.0e-123 449.1 1186 30.9
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 8.6e-123 446.0 1013 33.8
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 3.7e-118 430.6 1257 28.6
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 1.9e-117 428.3 1278 30.0
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.3e-115 422.2 888 33.6
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 1.8e-112 411.8 1244 29.3
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 4.0e-112 410.6 1343 29.0
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.2e-111 409.1 503 43.9
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.0e-111 408.3 1223 29.3
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.5e-108 397.5 922 32.0
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 1.9e-106 391.7 1222 29.2
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.3e-99 369.0 337 54.6
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 5.1e-99 367.1 1046 30.6
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 5.6e-98 363.6 1188 27.9
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 2.2e-94 351.7 803 34.9
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.9e-85 322.0 928 32.1
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.2e-85 320.9 927 31.9
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.3e-83 315.8 510 42.7
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 4.8e-81 307.4 285 51.9
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 6.9e-80 303.5 560 38.8
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.1e-77 296.2 757 31.7
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 1.5e-71 275.8 273 48.7
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 3.2e-69 268.1 412 38.3
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 3.9e-67 261.2 370 44.9
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 4.0e-64 251.1 208 62.0
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 4.0e-64 251.1 472 37.9
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.3e-62 246.1 207 62.3
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 6.7e-51 207.2 452 29.2
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.1e-50 206.5 217 51.2
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 1.5e-42 179.5 110 74.5
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 8.5e-38 163.7 236 40.3
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 5.5e-37 161.0 228 40.4
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 7.2e-37 160.6 116 66.4
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 8.0e-36 157.1 115 65.2
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 1.3e-33 149.8 315 32.4
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 2.8e-33 148.7 1156 22.3
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 4.1e-32 144.8 149 49.0
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 5.0e-30 137.9 81 75.3
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 5.7e-26 124.4 82 69.5
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.3e-25 120.6 76 71.1
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.4e-24 119.8 174 40.2
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.2e-18 100.1 68 70.6
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.8e-16 92.8 67 67.2
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.4e-16 91.3 67 65.7
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.2e-15 90.1 86 53.5
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 2.7e-15 89.0 97 50.5
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 2.8e-12 79.0 125 36.8
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 4.7e-12 78.2 142 31.0
Oeu028721.1 Olea europaea HOM05D004942 ORTHO05D005687 3.0e-11 75.5 104 44.2
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 6.8e-11 74.3 63 54.0
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 5.7e-10 71.2 105 41.9
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 9.2e-08 63.9 217 31.3
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 3.5e-07 62.0 220 30.5
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 4.6e-07 61.6 128 27.3
Aqoxy2G01048 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.9e-06 58.5 207 26.6


User provided reference genes

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