Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 0.0e+00 1642.1 907 100.0
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 0.0e+00 1089.3 927 67.7
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 2.3e-309 1065.4 912 65.5
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.2e-308 1063.1 928 66.7
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 1.9e-303 1045.8 923 65.3
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.6e-303 1044.3 913 65.5
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 1.6e-302 1042.7 923 65.5
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 8.0e-302 1040.4 923 65.5
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 3.4e-300 1035.0 933 63.9
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.9e-299 1031.2 916 65.4
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.6e-297 1026.2 902 64.1
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.6e-297 1026.2 928 64.7
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 1.8e-293 1012.7 922 63.3
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 9.8e-292 1006.9 921 62.5
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.7e-291 1006.1 947 63.3
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 3.2e-290 1001.9 919 63.0
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.6e-288 994.2 928 61.5
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.9e-287 992.6 925 62.8
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 9.5e-287 990.3 927 61.5
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.1e-285 986.9 929 61.1
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.5e-284 983.0 925 62.1
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 4.4e-284 981.5 925 63.2
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 5.8e-284 981.1 929 61.4
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 3.7e-283 978.4 1037 57.3
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 6.0e-281 971.1 919 60.5
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 5.1e-280 968.0 915 61.2
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 2.5e-279 965.7 979 59.3
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 3.3e-279 965.3 931 61.4
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 8.1e-278 960.7 868 65.7
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 2.4e-277 959.1 931 61.1
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 5.2e-277 958.0 931 60.2
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 5.8e-276 954.5 921 60.6
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 6.4e-275 951.0 950 59.9
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 6.4e-275 951.0 994 57.8
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.5e-273 945.3 845 64.0
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 2.3e-272 942.6 934 61.0
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 2.5e-271 939.1 930 60.2
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 4.7e-270 934.9 925 60.3
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 1.4e-269 933.3 896 60.2
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 6.9e-269 931.0 927 59.8
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 3.4e-268 928.7 928 59.7
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 1.3e-267 926.8 932 59.2
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.7e-267 926.4 918 59.6
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 8.4e-267 924.1 938 59.1
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 7.8e-265 917.5 924 58.8
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 5.1e-264 914.8 932 60.0
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 5.3e-261 904.8 933 57.3
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 2.2e-259 899.4 921 57.3
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 7.1e-258 894.4 914 58.6
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 7.1e-258 894.4 915 60.0
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.0e-256 890.6 918 59.6
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.5e-255 886.7 935 58.0
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 1.9e-255 886.3 926 59.3
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 3.4e-252 875.5 923 57.4
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 7.6e-252 874.4 911 57.0
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.3e-251 873.6 836 61.2
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.2e-249 867.1 921 57.2
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 1.6e-249 866.7 925 55.1
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 6.0e-249 864.8 908 55.5
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 8.7e-248 860.9 935 56.4
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.9e-247 859.8 937 55.3
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 2.5e-247 859.4 942 55.0
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.6e-246 856.7 916 56.3
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 2.8e-246 855.9 919 56.0
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 6.2e-246 854.7 914 56.2
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.4e-245 853.6 915 55.8
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 1.0e-243 847.4 910 57.5
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 1.0e-243 847.4 950 53.7
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 6.5e-243 844.7 936 55.0
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 1.1e-242 844.0 918 55.3
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.0e-240 837.4 918 55.8
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 3.9e-240 835.5 923 54.1
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 6.7e-240 834.7 923 55.4
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.1e-239 833.9 927 56.5
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.1e-239 833.9 921 56.2
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.5e-239 833.6 915 55.0
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 1.9e-239 833.2 931 53.4
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 9.7e-239 830.9 925 57.3
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.2e-238 829.7 922 54.7
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 3.7e-238 828.9 957 55.1
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 8.2e-238 827.8 925 54.5
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 6.9e-237 824.7 962 53.2
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.4e-236 822.4 872 56.5
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 2.9e-235 819.3 917 53.5
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 2.9e-235 819.3 921 54.2
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 2.4e-229 799.7 917 52.8
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 9.1e-229 797.7 930 52.3
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.2e-228 797.3 917 52.9
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 3.4e-228 795.8 919 53.9
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 5.1e-224 781.9 936 51.5
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 8.8e-224 781.2 912 51.6
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 6.1e-217 758.4 955 51.7
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 1.7e-190 670.6 919 48.3
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 2.1e-185 653.7 686 59.3
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 4.9e-182 642.5 946 43.3
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.0e-179 634.8 936 43.9
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 3.0e-179 633.3 922 44.8
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 6.6e-179 632.1 808 50.2
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 4.3e-162 576.2 443 65.0
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 6.0e-156 555.8 608 56.2
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 7.3e-154 548.9 394 70.8
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.0e-151 540.8 602 60.1
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 3.3e-146 523.5 515 64.5
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 3.7e-129 466.8 581 50.8
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 3.0e-123 447.2 901 38.3
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.3e-105 388.7 604 44.9
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 5.5e-101 373.2 484 51.4
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.0e-94 352.4 264 68.2
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.9e-79 300.1 323 59.1
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 4.4e-74 283.9 289 60.6
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 2.9e-73 281.2 261 55.6
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 2.4e-72 278.1 308 57.1
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.1e-68 265.0 398 49.7
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.0e-67 262.7 265 51.3
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.3e-65 255.8 315 56.2
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 2.3e-62 245.0 955 28.5
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.6e-60 238.8 205 60.0
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.1e-53 216.1 244 57.0
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 3.3e-53 214.5 365 42.2
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.1e-48 199.5 1129 24.9
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 1.5e-37 162.5 328 44.8
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.5e-31 141.4 102 74.5
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.9e-31 140.2 129 55.8
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.9e-31 140.2 130 55.4
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.0e-30 138.3 109 70.6
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 8.7e-30 136.7 131 63.4
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 8.7e-30 136.7 99 66.7
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 2.5e-29 135.2 786 27.1
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 2.8e-28 131.7 221 42.5
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 4.8e-28 131.0 334 35.9
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 6.9e-27 127.1 117 57.3
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 2.0e-26 125.6 684 24.4
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 3.4e-26 124.8 112 59.8
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.0e-22 111.7 116 56.0
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 7.4e-21 107.1 92 64.1
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 3.7e-20 104.8 92 64.1
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 2.6e-18 98.6 207 35.3
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.7e-17 95.9 68 76.5
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 2.2e-17 95.5 72 73.6
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.7e-15 88.6 52 82.7
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 4.6e-15 87.8 133 43.6
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.0e-14 86.7 52 82.7
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.0e-14 86.7 56 80.4
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.8e-12 77.8 87 51.7
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-11 76.6 54 75.9
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.1e-11 76.6 91 56.0
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.4e-11 75.5 58 67.2
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 1.2e-07 63.2 93 49.5
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 2.1e-07 62.4 45 68.9
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.6e-07 61.2 48 70.8


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