Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.6e-136 489.6 275 100.0
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 1.6e-56 223.8 360 45.0
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.5e-54 217.2 355 45.6
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.4e-54 216.1 357 45.9
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 9.3e-52 208.0 353 41.4
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.3e-50 204.1 400 39.5
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 3.9e-50 202.6 344 43.6
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.5e-49 199.9 400 40.8
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 1.3e-48 197.6 402 36.3
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.6e-48 197.2 341 44.3
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.0e-47 192.6 324 40.4
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.0e-47 192.6 324 40.4
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.2e-46 191.0 326 50.3
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.4e-46 189.5 400 40.2
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 2.9e-45 186.4 389 42.4
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 4.9e-45 185.7 404 36.1
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 8.4e-45 184.9 406 38.9
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.1e-44 184.5 337 45.1
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.2e-44 182.6 330 39.1
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.6e-43 180.6 322 50.6
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.5e-43 179.5 403 39.0
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 3.5e-43 179.5 426 37.6
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 7.9e-43 178.3 396 40.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.8e-42 177.2 405 38.0
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 3.0e-42 176.4 392 40.6
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.1e-41 174.5 324 44.8
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.6e-41 171.4 317 43.5
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.3e-40 171.0 321 47.4
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.3e-40 171.0 321 47.4
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.6e-40 170.6 379 39.8
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 3.7e-40 169.5 317 43.2
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 6.3e-40 168.7 377 35.5
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.4e-39 167.5 398 39.4
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.4e-39 167.5 392 36.5
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.8e-39 167.2 383 37.9
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.8e-39 167.2 383 37.9
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.4e-39 166.8 374 33.4
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 5.3e-39 165.6 363 39.7
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 6.9e-39 165.2 402 38.6
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.2e-38 164.5 395 34.2
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 2.0e-38 163.7 394 39.3
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 4.5e-38 162.5 403 32.5
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 4.5e-38 162.5 403 32.5
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 5.9e-38 162.2 375 32.5
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 7.6e-38 161.8 341 37.0
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.0e-37 161.4 395 33.9
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.0e-37 161.4 401 35.7
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.2e-37 160.2 375 34.1
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.1e-36 157.9 361 36.0
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 2.5e-36 156.8 430 33.3
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 3.2e-36 156.4 318 37.1
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 6.1e-35 152.1 411 38.0
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 6.1e-35 152.1 416 36.8
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 7.9e-35 151.8 404 38.6
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.3e-34 151.0 391 32.2
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.8e-34 150.6 355 36.1
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 3.0e-34 149.8 391 38.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 3.9e-34 149.4 350 34.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 5.1e-34 149.1 413 32.2
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 6.7e-34 148.7 290 38.6
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.5e-33 147.5 381 38.6
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 4.3e-33 146.0 340 34.1
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 5.7e-33 145.6 364 40.4
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.6e-32 144.1 412 35.9
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.6e-32 144.1 419 35.3
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.2e-32 143.7 385 39.7
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.3e-32 142.1 372 35.5
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 6.3e-32 142.1 372 35.5
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-31 141.4 419 35.3
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.4e-31 141.0 420 35.2
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.4e-31 141.0 420 35.2
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 3.1e-31 139.8 158 53.2
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 5.3e-31 139.0 378 32.5
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 2.0e-30 137.1 300 37.0
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.7e-30 135.2 393 36.4
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.7e-30 135.2 372 38.2
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 7.7e-30 135.2 325 36.6
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 7.7e-30 135.2 325 36.6
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.7e-29 134.0 323 34.1
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.7e-29 134.0 325 32.6
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 3.8e-29 132.9 361 39.1
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 6.5e-29 132.1 364 39.0
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.5e-28 130.2 332 39.8
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 3.2e-28 129.8 419 30.1
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 7.2e-28 128.6 389 38.3
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.2e-27 127.9 409 30.6
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.2e-27 127.9 230 38.7
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 2.1e-27 127.1 390 35.9
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 7.9e-27 125.2 382 30.9
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.0e-26 124.8 380 35.8
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.8e-26 124.0 171 59.6
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.3e-26 123.6 250 42.8
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 3.0e-26 123.2 286 42.0
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.1e-25 121.3 162 61.1
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 3.3e-25 119.8 331 33.5
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.3e-25 119.8 169 58.6
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.2e-24 117.1 172 58.7
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.4e-23 113.6 335 33.1
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 2.4e-23 113.6 335 33.1
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 4.1e-23 112.8 422 28.9
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-22 111.3 165 40.0
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-22 111.3 165 40.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.0e-21 108.2 165 39.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.3e-21 107.8 164 39.6
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.9e-21 106.7 220 35.0
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.0e-21 105.9 218 42.7
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.4e-20 104.4 326 28.8
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.9e-20 104.0 178 53.9
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 3.2e-20 103.2 344 32.3
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 5.5e-20 102.4 108 51.9
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.6e-19 100.9 150 42.7
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 7.9e-19 98.6 164 56.1
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.0e-18 96.7 110 69.1
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.1e-17 94.7 241 33.6
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.1e-17 94.7 374 32.4
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 4.4e-17 92.8 158 38.0
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 9.7e-17 91.7 399 28.1
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 3.7e-16 89.7 335 28.4
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 4.8e-16 89.4 165 49.7
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 4.8e-16 89.4 165 49.7
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.1e-15 88.2 138 45.7
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.8e-15 87.4 166 51.2
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-15 87.4 145 44.8
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 1.8e-15 87.4 145 44.8
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.8e-15 87.4 176 39.2
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 2.4e-15 87.0 145 39.3
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 2.4e-15 87.0 145 39.3
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 2.4e-15 87.0 145 39.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 4.1e-15 86.3 166 40.4
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 7.0e-15 85.5 139 39.6
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.2e-14 84.7 145 37.2
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 7.7e-14 82.0 307 29.6
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 7.7e-14 82.0 157 38.2
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.3e-13 81.3 166 47.6
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.2e-13 80.5 334 27.2
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 3.8e-13 79.7 166 36.1
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 5.0e-13 79.3 170 35.9
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.9e-12 77.4 157 35.7
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-12 77.4 157 35.7
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.9e-12 77.4 157 35.7
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.9e-12 77.4 146 56.8
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 9.4e-12 75.1 175 43.4
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 2.1e-11 73.9 277 36.1
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.4e-10 71.2 276 29.7
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.0e-10 69.7 89 48.3
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 4.0e-10 69.7 271 29.5
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 3.7e-08 63.2 159 42.8
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.1e-07 60.1 130 34.6
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 5.3e-07 59.3 139 33.8
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 5.3e-07 59.3 142 32.4
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.2e-06 58.2 197 33.0
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 2.0e-06 57.4 215 28.8
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 4.5e-06 56.2 160 31.9
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 7.7e-06 55.5 112 39.3


User provided reference genes

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