Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 3.5e-58 228.0 110 100.0
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 1.9e-19 99.4 110 49.1
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.2e-18 96.7 116 47.4
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.1e-18 95.9 116 47.4
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.0e-18 94.4 116 47.4
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 3.9e-17 91.7 123 49.6
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 2.5e-16 89.0 110 52.7
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 3.3e-16 88.6 108 51.9
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.6e-15 86.3 112 50.0
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 2.1e-15 85.9 114 49.1
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 4.7e-15 84.7 114 49.1
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 6.2e-15 84.3 114 51.8
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 1.4e-14 83.2 120 47.5
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.4e-14 82.4 115 43.5
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.4e-14 82.4 69 63.8
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 2.4e-14 82.4 111 46.8
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 3.1e-14 82.0 72 63.9
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 3.1e-14 82.0 111 49.5
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 3.1e-14 82.0 105 51.4
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.9e-14 80.9 69 63.8
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 9.0e-14 80.5 111 44.1
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 9.0e-14 80.5 108 50.9
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 9.0e-14 80.5 69 62.3
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.2e-13 80.1 112 44.6
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.5e-13 79.7 120 45.8
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 1.5e-13 79.7 116 50.0
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.5e-13 79.7 116 50.0
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.5e-13 79.7 115 48.7
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.0e-13 79.3 114 46.5
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 2.0e-13 79.3 110 47.3
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.0e-13 79.3 116 48.3
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 2.6e-13 79.0 130 43.8
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 3.4e-13 78.6 105 45.7
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.4e-13 78.6 121 47.9
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 3.4e-13 78.6 110 46.4
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 4.4e-13 78.2 113 45.1
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 4.4e-13 78.2 113 45.1
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 4.4e-13 78.2 111 47.7
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 4.4e-13 78.2 106 49.1
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 5.8e-13 77.8 107 45.8
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 5.8e-13 77.8 104 47.1
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 5.8e-13 77.8 113 47.8
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.6e-13 77.4 122 44.3
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 9.9e-13 77.0 110 44.5
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 9.9e-13 77.0 105 47.6
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.3e-12 76.6 125 44.8
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.3e-12 76.6 110 48.2
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 1.3e-12 76.6 106 48.1
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 1.3e-12 76.6 103 49.5
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 1.7e-12 76.3 113 46.0
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.2e-12 75.9 116 47.4
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 3.8e-12 75.1 105 45.7
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.8e-12 75.1 77 55.8
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.8e-12 75.1 105 45.7
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 4.9e-12 74.7 113 45.1
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.1e-11 73.6 61 63.9
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.1e-11 73.6 117 42.7
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.9e-11 72.8 115 43.5
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.9e-11 72.8 107 45.8
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 2.4e-11 72.4 110 41.8
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.4e-11 72.4 110 47.3
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 4.2e-11 71.6 108 44.4
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 4.2e-11 71.6 115 43.5
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 4.2e-11 71.6 113 46.9
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 7.1e-11 70.9 70 54.3
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 7.1e-11 70.9 110 44.5
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 9.3e-11 70.5 112 44.6
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 9.3e-11 70.5 115 46.1
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 9.3e-11 70.5 105 43.8
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 9.3e-11 70.5 118 44.1
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 1.2e-10 70.1 115 40.0
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.6e-10 69.7 110 46.4
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.6e-10 69.7 109 44.0
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 2.1e-10 69.3 111 43.2
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 2.1e-10 69.3 104 43.3
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 2.1e-10 69.3 112 41.1
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 2.7e-10 68.9 105 43.8
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 2.7e-10 68.9 60 55.0
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 3.5e-10 68.6 63 60.3
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 3.5e-10 68.6 112 40.2
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 3.5e-10 68.6 112 43.8
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 4.6e-10 68.2 108 40.7
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 4.6e-10 68.2 114 43.9
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 6.0e-10 67.8 103 43.7
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 1.0e-09 67.0 73 50.7
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.7e-09 66.2 116 43.1
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.7e-09 66.2 122 42.6
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.7e-09 66.2 111 37.8
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.3e-09 65.9 61 55.7
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 2.3e-09 65.9 113 40.7
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 2.3e-09 65.9 60 53.3
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 3.0e-09 65.5 108 40.7
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 3.0e-09 65.5 112 42.0
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 3.0e-09 65.5 69 53.6
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 3.9e-09 65.1 111 41.4
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.9e-09 65.1 108 40.7
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 3.9e-09 65.1 72 50.0
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 5.1e-09 64.7 110 42.7
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 5.1e-09 64.7 110 42.7
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.1e-09 64.7 112 42.0
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 5.1e-09 64.7 72 48.6
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 8.7e-09 63.9 104 42.3
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 8.7e-09 63.9 113 38.9
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 1.1e-08 63.5 63 54.0
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 1.5e-08 63.2 65 50.8
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.5e-08 63.2 111 44.1
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.9e-08 62.8 72 59.7
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 2.5e-08 62.4 115 37.4
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 4.3e-08 61.6 121 40.5
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 4.3e-08 61.6 111 41.4
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 4.3e-08 61.6 118 39.8
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 7.3e-08 60.8 108 37.0
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 9.6e-08 60.5 112 39.3
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 1.3e-07 60.1 106 41.5
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 2.1e-07 59.3 112 41.1
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 2.1e-07 59.3 70 51.4
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.1e-07 57.4 102 45.1
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 8.1e-07 57.4 77 48.1
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.4e-06 56.6 120 38.3
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 2.4e-06 55.8 67 47.8
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.4e-06 55.8 106 36.8
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 4.0e-06 55.1 115 36.5
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 5.3e-06 54.7 51 56.9
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 5.3e-06 54.7 51 56.9
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 6.9e-06 54.3 28 82.1
PSO017G0024 Papaver somniferum HOM05D005816 ORTHO05D006915 6.9e-06 54.3 27 85.2
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 9.0e-06 53.9 109 37.6


User provided reference genes

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