Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 2.2e-48 195.3 97 100.0
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 2.6e-25 118.6 82 65.9
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 5.8e-25 117.5 97 63.9
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 9.9e-25 116.7 71 77.5
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 6.4e-24 114.0 79 69.6
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.1e-23 113.2 81 60.5
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.1e-23 113.2 81 60.5
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 1.1e-23 113.2 79 69.6
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.4e-23 112.8 98 52.0
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 1.4e-23 112.8 71 73.2
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 1.9e-23 112.5 67 79.1
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.4e-23 112.1 94 62.8
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 3.2e-23 111.7 92 55.4
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 5.5e-23 110.9 79 70.9
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 5.5e-23 110.9 87 56.3
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 7.1e-23 110.5 84 63.1
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 9.3e-23 110.2 79 69.6
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 9.3e-23 110.2 67 77.6
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 1.6e-22 109.4 99 54.5
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.6e-22 109.4 86 64.0
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 1.6e-22 109.4 81 65.4
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 2.1e-22 109.0 69 76.8
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 2.1e-22 109.0 78 67.9
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 2.1e-22 109.0 67 73.1
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 2.1e-22 109.0 81 65.4
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.7e-22 108.6 81 63.0
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 3.5e-22 108.2 78 62.8
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 3.5e-22 108.2 78 62.8
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 3.5e-22 108.2 78 65.4
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.5e-22 108.2 82 63.4
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 4.6e-22 107.8 71 66.2
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 4.6e-22 107.8 73 69.9
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.6e-22 107.8 84 61.9
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 4.6e-22 107.8 92 62.0
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 7.9e-22 107.1 87 57.5
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 7.9e-22 107.1 77 62.3
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 7.9e-22 107.1 80 57.5
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 7.9e-22 107.1 74 64.9
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 1.3e-21 106.3 78 62.8
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.3e-21 106.3 77 64.9
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.8e-21 105.9 80 58.8
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 2.3e-21 105.5 102 52.0
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 3.0e-21 105.1 77 62.3
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.0e-21 105.1 84 60.7
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 3.0e-21 105.1 74 66.2
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 3.9e-21 104.8 80 57.5
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 3.9e-21 104.8 74 64.9
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.1e-21 104.4 81 63.0
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.1e-21 104.4 81 63.0
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.1e-21 104.4 81 63.0
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 8.7e-21 103.6 84 56.0
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 8.7e-21 103.6 67 74.6
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.1e-20 103.2 80 58.8
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.5e-20 102.8 92 56.5
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 1.9e-20 102.4 79 64.6
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.9e-20 102.4 70 68.6
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.9e-20 102.4 78 62.8
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.9e-20 102.4 78 62.8
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 2.5e-20 102.1 81 59.3
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 4.3e-20 101.3 92 58.7
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 5.6e-20 100.9 86 55.8
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 5.6e-20 100.9 81 55.6
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 9.6e-20 100.1 88 56.8
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 1.3e-19 99.8 81 56.8
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.3e-19 99.8 81 60.5
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.3e-19 99.8 85 60.0
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.6e-19 99.4 81 54.3
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.6e-19 99.4 81 60.5
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 1.6e-19 99.4 88 54.5
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 1.6e-19 99.4 68 66.2
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.6e-19 99.4 81 59.3
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.1e-19 99.0 80 61.2
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 2.1e-19 99.0 81 54.3
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 2.1e-19 99.0 95 52.6
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 2.1e-19 99.0 89 52.8
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.8e-19 98.6 91 56.0
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 2.8e-19 98.6 108 50.0
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.7e-19 98.2 67 68.7
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 3.7e-19 98.2 84 57.1
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 3.7e-19 98.2 81 58.0
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 8.2e-19 97.1 71 63.4
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 1.1e-18 96.7 73 61.6
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 1.1e-18 96.7 80 57.5
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.4e-18 96.3 79 62.0
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.4e-18 96.3 79 62.0
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.8e-18 95.9 83 59.0
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.8e-18 95.9 83 54.2
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 3.1e-18 95.1 69 63.8
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 4.0e-18 94.7 83 51.8
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 4.0e-18 94.7 81 58.0
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 5.3e-18 94.4 73 60.3
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 6.9e-18 94.0 81 56.8
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.9e-18 94.0 79 62.0
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 6.9e-18 94.0 74 55.4
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 9.0e-18 93.6 81 55.6
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 9.0e-18 93.6 81 55.6
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 9.0e-18 93.6 81 55.6
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.2e-17 93.2 76 57.9
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 1.2e-17 93.2 74 59.5
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.5e-17 92.8 95 49.5
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 2.6e-17 92.0 69 62.3
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.6e-17 92.0 69 62.3
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.6e-17 92.0 69 62.3
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.6e-17 92.0 69 62.3
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 3.4e-17 91.7 67 62.7
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 7.6e-17 90.5 84 54.8
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 7.6e-17 90.5 67 67.2
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 1.0e-16 90.1 79 59.5
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 1.3e-16 89.7 80 51.2
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 1.7e-16 89.4 80 51.2
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.7e-16 89.4 69 60.9
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 2.2e-16 89.0 76 57.9
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 3.8e-16 88.2 67 62.7
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 3.2e-15 85.1 70 58.6
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 4.2e-15 84.7 88 46.6
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.6e-14 82.8 66 54.5
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 4.6e-14 81.3 56 73.2
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 2.3e-13 79.0 75 56.0
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 3.0e-13 78.6 76 46.1
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 6.7e-13 77.4 66 60.6
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.9e-12 75.9 55 65.5
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 2.5e-12 75.5 88 51.1
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 5.3e-10 67.8 67 56.7
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 9.0e-10 67.0 68 48.5
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.6e-09 65.5 92 45.7
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.3e-08 63.2 57 54.4
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.2e-07 58.5 44 63.6
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 7.2e-07 57.4 39 69.2
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 3.6e-06 55.1 59 52.5
Potri.010G015300 Populus trichocarpa HOM05D009285 ORTHO05D009865 6.1e-06 54.3 76 34.2
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.9e-06 53.9 56 53.6


User provided reference genes

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