Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 1.2e-67 259.6 125 100.0
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 7.5e-17 90.9 98 46.9
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 9.8e-17 90.5 98 45.9
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.7e-16 89.7 103 44.7
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 4.9e-16 88.2 111 43.2
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 1.4e-15 86.7 114 44.7
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 1.4e-15 86.7 101 44.6
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 1.9e-15 86.3 110 40.0
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 2.4e-15 85.9 103 42.7
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 4.1e-15 85.1 109 43.1
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 5.4e-15 84.7 108 44.4
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 5.4e-15 84.7 106 48.1
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 7.0e-15 84.3 103 44.7
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 4.6e-14 81.6 130 41.5
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 7.8e-14 80.9 91 41.8
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 1.0e-13 80.5 82 47.6
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 1.3e-13 80.1 124 37.9
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 1.9e-12 76.3 107 38.3
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 9.5e-12 73.9 66 56.1
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 2.8e-11 72.4 78 42.3
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 3.6e-11 72.0 78 42.3
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 6.2e-11 71.2 125 36.8
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 8.1e-11 70.9 111 36.9
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 1.1e-10 70.5 58 50.0
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 1.8e-10 69.7 133 36.8
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 4.0e-10 68.6 59 49.2
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 4.0e-10 68.6 59 49.2
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 4.0e-10 68.6 59 49.2
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 4.0e-10 68.6 59 49.2
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 4.0e-10 68.6 72 50.0
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 4.0e-10 68.6 72 50.0
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 5.2e-10 68.2 59 49.2
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 5.2e-10 68.2 132 35.6
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 8.9e-10 67.4 138 37.0
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 8.9e-10 67.4 46 54.3
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 1.5e-09 66.6 132 34.8
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 2.0e-09 66.2 43 55.8
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 2.0e-09 66.2 43 55.8
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 2.0e-09 66.2 43 55.8
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.0e-09 66.2 46 54.3
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 2.0e-09 66.2 123 36.6
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 2.0e-09 66.2 125 36.8
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 2.6e-09 65.9 44 54.5
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 2.6e-09 65.9 46 52.2
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 2.6e-09 65.9 129 34.9
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 4.4e-09 65.1 46 52.2
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.4e-09 65.1 47 51.1
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 5.8e-09 64.7 73 45.2
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 5.8e-09 64.7 134 38.1
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 7.5e-09 64.3 93 37.6
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 7.5e-09 64.3 85 37.6
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 9.9e-09 63.9 43 53.5
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 1.3e-08 63.5 113 36.3
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 2.2e-08 62.8 119 35.3
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 2.2e-08 62.8 70 41.4
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 2.2e-08 62.8 47 48.9
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 2.9e-08 62.4 55 38.2
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 3.7e-08 62.0 113 39.8
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 4.9e-08 61.6 47 53.2
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 6.4e-08 61.2 88 38.6
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 8.3e-08 60.8 103 37.9
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 1.1e-07 60.5 97 42.3
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.9e-07 59.7 46 43.5
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 4.1e-07 58.5 43 44.2
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 4.1e-07 58.5 43 55.8
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 4.1e-07 58.5 43 55.8
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 7.1e-07 57.8 92 40.2
AUR62035218 Chenopodium quinoa HOM05D007757 ORTHO05D009619 9.2e-07 57.4 61 47.5
Nn3g17848 Nelumbo nucifera HOM05D021434 ORTHO05D009619 2.1e-06 56.2 111 35.1
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 2.7e-06 55.8 43 51.2
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 4.6e-06 55.1 41 51.2


User provided reference genes

Program Settings