Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 3.7e-160 568.2 286 100.0
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.2e-79 298.9 280 61.4
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.2e-70 270.8 293 56.0
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.0e-69 267.7 289 54.7
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.9e-69 265.8 289 54.3
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.9e-69 265.8 289 54.3
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.3e-67 260.8 316 50.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.8e-66 256.9 310 51.3
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 3.1e-66 256.1 289 54.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 9.0e-66 254.6 299 51.5
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.9e-64 249.6 289 52.6
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.4e-63 247.3 264 55.7
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.6e-62 243.8 295 51.5
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 2.1e-62 243.4 267 55.1
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 4.6e-62 242.3 264 55.7
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 6.0e-62 241.9 298 53.4
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.0e-61 241.1 301 49.8
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 3.3e-60 236.1 245 56.7
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.3e-59 234.2 262 52.7
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.6e-59 233.8 330 47.9
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.8e-59 233.0 287 53.0
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 4.8e-59 232.3 310 50.0
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 4.8e-59 232.3 293 50.9
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.4e-58 230.7 279 52.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 4.1e-58 229.2 305 49.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 4.1e-58 229.2 288 50.7
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 6.9e-58 228.4 316 47.8
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.0e-57 226.9 300 49.3
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 4.5e-57 225.7 278 51.8
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.2e-56 223.4 276 51.8
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.9e-55 220.3 310 49.4
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.6e-54 216.1 214 57.0
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.0e-53 214.5 283 53.0
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.3e-53 214.2 302 48.7
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.8e-53 213.8 267 50.6
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.5e-52 209.9 299 48.5
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-51 207.6 272 48.2
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-51 207.2 286 46.9
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.2e-51 206.8 283 47.3
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 3.1e-50 203.0 321 46.1
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.1e-50 202.6 316 45.9
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 5.3e-50 202.2 250 51.6
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.0e-49 200.3 250 48.8
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 5.9e-49 198.7 285 49.1
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.0e-48 198.0 266 49.2
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.8e-48 196.1 273 49.5
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 5.0e-48 195.7 234 50.0
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 5.0e-48 195.7 319 47.3
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 6.5e-48 195.3 311 46.9
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 8.5e-48 194.9 255 51.0
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 9.4e-47 191.4 294 44.6
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.6e-46 190.7 340 42.9
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 2.7e-46 189.9 306 44.1
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 4.6e-46 189.1 282 46.1
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 7.9e-46 188.3 296 44.3
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.0e-45 188.0 261 47.1
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 8.8e-45 184.9 264 48.5
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.1e-44 184.5 225 52.9
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.5e-44 184.1 278 47.5
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.4e-44 182.6 340 42.4
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 4.4e-44 182.6 276 46.7
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.7e-43 180.6 240 47.5
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.8e-43 179.9 338 42.6
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.8e-43 179.9 338 42.6
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 5.3e-42 175.6 283 46.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 5.3e-42 175.6 225 49.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 2.9e-40 169.9 290 42.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 5.0e-40 169.1 270 46.3
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 8.5e-40 168.3 274 44.2
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 8.5e-40 168.3 285 42.8
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.2e-38 164.5 214 49.1
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.6e-38 164.1 263 43.7
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.7e-38 163.3 241 46.1
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.6e-38 162.9 205 47.8
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.8e-37 160.6 283 45.2
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 2.3e-37 160.2 297 39.7
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 6.7e-37 158.7 298 43.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 6.7e-37 158.7 298 43.6
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 8.8e-37 158.3 287 43.9
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 2.6e-36 156.8 289 43.3
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 3.3e-36 156.4 285 43.9
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 4.4e-36 156.0 269 44.2
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.3e-35 154.5 229 44.5
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.7e-35 152.9 203 49.3
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 4.8e-35 152.5 202 49.5
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.4e-34 150.2 262 42.4
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 4.1e-34 149.4 198 49.0
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 5.3e-34 149.1 203 46.8
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.3e-34 149.1 159 56.6
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 5.3e-34 149.1 277 43.7
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.2e-33 147.9 159 57.9
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.2e-33 147.9 291 42.6
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.0e-33 147.1 288 41.7
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.5e-33 146.0 158 55.1
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.0e-32 144.8 126 62.7
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.3e-32 144.4 223 43.0
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.9e-32 143.3 339 38.3
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 5.0e-32 142.5 198 48.0
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 6.5e-32 142.1 287 39.4
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.5e-32 141.7 213 44.6
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.5e-31 140.2 213 46.0
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.5e-31 140.2 215 43.7
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 5.5e-31 139.0 212 45.8
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 8.0e-30 135.2 161 50.9
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 8.0e-30 135.2 284 37.0
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.0e-29 134.8 83 79.5
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 3.0e-29 133.3 220 43.6
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 6.7e-29 132.1 218 41.3
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 8.8e-29 131.7 216 43.5
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.0e-28 130.6 104 65.4
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 4.4e-28 129.4 201 46.3
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 7.5e-28 128.6 261 39.1
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 9.7e-28 128.3 198 46.0
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.3e-27 125.6 197 42.6
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.1e-26 123.2 150 48.7
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.1e-26 122.9 144 50.0
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 7.0e-26 122.1 254 39.4
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.2e-25 121.3 299 36.8
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.7e-25 120.2 287 38.3
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.7e-25 120.2 195 46.2
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 2.7e-25 120.2 229 40.6
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-24 117.5 198 42.4
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 2.2e-24 117.1 203 42.4
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.9e-23 114.0 186 42.5
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.9e-23 114.0 191 45.0
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 5.5e-23 112.5 99 61.6
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 9.4e-23 111.7 179 45.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 9.4e-23 111.7 170 47.1
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-22 110.9 194 42.3
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.6e-22 110.9 194 42.3
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.1e-22 110.5 153 47.7
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.7e-22 109.4 150 48.7
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 4.7e-22 109.4 209 42.1
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.8e-21 105.5 128 54.7
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 2.6e-20 103.6 276 38.0
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 7.5e-20 102.1 192 40.1
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 9.8e-20 101.7 121 52.9
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 4.1e-18 96.3 212 36.8
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 4.5e-17 92.8 225 37.8
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 7.2e-15 85.5 277 35.0
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 4.7e-14 82.8 206 37.4
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.2e-12 78.2 258 34.9
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 4.4e-12 76.3 95 52.6
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 9.8e-12 75.1 189 34.9
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 9.2e-10 68.6 47 66.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 9.2e-10 68.6 47 66.0
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.2e-09 68.2 65 53.8
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.6e-09 67.8 140 40.0
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 7.8e-09 65.5 129 35.7
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.7e-08 64.3 195 28.7
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 2.3e-08 63.9 76 44.7
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 2.3e-08 63.9 197 32.0
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.0e-08 62.8 46 58.7
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.0e-08 62.8 46 58.7
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.6e-08 62.4 118 34.7
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 3.3e-07 60.1 89 39.3
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.3e-07 60.1 198 32.8
HPP92_004810 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.6e-06 57.8 67 50.7


User provided reference genes

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